# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7dA 384 1.393 c.2.1.4,c.23.12.2 77774,77775 2avnA 260 1.854 c.66.1.41 127380 1h2bA 359 2.302 b.35.1.2,c.2.1.1 90543,90544 2hmvA 144 4.865 c.2.1.9 136615 1x13A 401 5.681 1fp2A 352 5.838 a.4.5.29,c.66.1.12 59941,59942 1pjcA 361 5.946 c.2.1.4,c.23.12.2 30101,31361 1kjqA 391 6.009 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2nxcA 254 6.305 c.66.1.39 138739 3c85A 183 6.453 1fp1D 372 6.698 a.4.5.29,c.66.1.12 59939,59940 1uufA 369 7.435 b.35.1.2,c.2.1.1 100006,100007 1qzzA 374 8.251 a.4.5.29,c.66.1.12 96719,96720 2aefA 234 8.308 1qorA 327 8.409 b.35.1.2,c.2.1.1 24766,29782 2g1uA 155 9.933 1lssA 140 11.29 c.2.1.9 74246 2rbkA 261 11.75 1c1dA 355 11.99 c.2.1.7,c.58.1.1 30270,33918 1ve3A 227 12.25 c.66.1.43 120010 1kyqA 274 13.15 c.2.1.11,e.37.1.1 73281,73282 2h1rA 299 14.09 1i1nA 226 14.89 c.66.1.7 71102 1zrhA 274 16.14 3ladA 476 16.20 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1tw3A 360 16.86 a.4.5.29,c.66.1.12 107373,107374 1ls6A 295 17.00 c.37.1.5 91115 1dusA 194 17.08 c.66.1.4 34182 2as0A 396 17.10 b.122.1.9,c.66.1.51 127227,127228 1bag 425 17.31 1f6yA 262 17.55 c.1.21.2 29673 1uirA 314 19.06 c.66.1.17 99429 1kevA 351 19.57 b.35.1.2,c.2.1.1 24749,29765 2r3sA 335 19.66 2frnA 278 19.69 c.66.1.47 133993 1poiB 260 20.31 c.124.1.3 34155 2hmaA 376 20.42 1x9iA 302 21.44 c.80.1.1 114997 1lehA 364 22.57 c.2.1.7,c.58.1.1 30268,33916 1ua7A 422 23.21 b.71.1.1,c.1.8.1 107759,107760 1wxxA 382 23.37 b.122.1.9,c.66.1.51 121418,121419 1jqbA 351 23.70 b.35.1.2,c.2.1.1 77151,77152 1kyzA 365 23.74 a.4.5.29,c.66.1.12 73312,73313 2ehbD 143 23.75 1jvbA 347 24.40 b.35.1.2,c.2.1.1 77181,77182 2ouiA 360 27.25 1xxlA 239 27.42 c.66.1.41 116203 1p91A 269 27.47 c.66.1.33 94378 2cf5A 357 27.51 1xdzA 240 27.58 c.66.1.20 115196 1zq9A 285 27.89 c.66.1.24 125505 1trb 320 28.77 1lsuA 147 29.14 c.2.1.9 74250 1y8cA 246 29.80 c.66.1.43 116563 1ws6A 171 30.38 c.66.1.46 121222 1ri5A 298 30.79 c.66.1.34 97502 1uwvA 433 31.03 b.40.4.12,c.66.1.40 100128,100129 2v3aA 384 31.08 3by4A 212 31.70 1l1eA 287 36.95 c.66.1.18 73454 1im8A 244 37.73 c.66.1.14 66212 1xtpA 254 37.80 c.66.1.42 116031 1mjfA 281 37.81 c.66.1.17 79198 2cdcA 366 37.97 2fhpA 187 38.56 c.66.1.46 133495 2fpoA 202 38.67 c.66.1.46 133909 1gu7A 364 41.65 b.35.1.2,c.2.1.1 83321,83322 3canA 182 41.88 2h00A 254 42.72 c.66.1.54 135925 1qyrA 252 42.82 c.66.1.24 104657 2gwhA 298 44.03 1ne2A 200 44.05 c.66.1.32 85586 2basA 431 45.61 c.1.33.1,d.110.6.2 128244,128245 1q77A 138 46.62 c.26.2.4 96023 2rcyA 262 47.03 1gsoA 431 47.19 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1gesA 450 47.81 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2fk8A 318 47.93 c.66.1.18 133648 2bg9E 370 48.22 2vhxA 377 48.65 2bm8A 236 49.27 c.66.1.50 128771 1p1cA 199 49.28 c.66.1.16 87669 1nhp 447 50.52 1sur 215 50.88 1yqdA 366 51.27 2o28A 184 51.62 1vid 221 52.28 2dulA 378 54.31 2dplA 308 54.43 1pl8A 356 54.87 b.35.1.2,c.2.1.1 94878,94879 1xvaA 292 55.26 c.66.1.5 34183 1lqtA 456 57.37 c.3.1.1,c.4.1.1 74198,74199 2rebA 352 59.72 c.37.1.11,d.48.1.1 32282,38767 1f3lA 321 61.20 c.66.1.6 59630 1sqgA 429 62.08 a.79.1.3,c.66.1.38 105912,105913 1nv8A 284 63.09 c.66.1.30 86224 1d7yA 408 63.54 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1hx0A 496 64.42 b.71.1.1,c.1.8.1 61346,61347 1wyuA 438 65.26 c.67.1.7 121452 1kolA 398 65.62 b.35.1.2,c.2.1.1 77474,77475 2cduA 452 65.77 1y9aA 360 67.28 1qamA 244 67.50 c.66.1.24 34220 1ks9A 291 69.16 a.100.1.7,c.2.1.6 68857,68858 1ej0A 180 69.22 c.66.1.2 34179 2hqyA 305 69.36 2bg9A 370 69.51 2iidA 498 70.91 c.3.1.2,d.16.1.5 137426,137427 1igs 248 71.41 1vkjA 285 73.47 c.37.1.5 108666 2ogyA 262 73.52 1vj0A 380 74.03 b.35.1.2,c.2.1.1 100786,100787 3c6kA 381 74.94 2esrA 177 75.88 c.66.1.46 132344 1vl5A 260 76.01 c.66.1.41 108720 2ho4A 259 77.27 2ax3A 502 77.42 c.72.1.4,c.104.1.1 127477,127478 1gpjA 404 78.64 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1k77A 260 79.38 c.1.15.5 72096 1h1dA 221 79.69 c.66.1.1 83452 1reoA 486 80.17 c.3.1.2,d.16.1.5 97325,97326 1ldg 316 80.75 2ip2A 334 82.73 2o57A 297 82.75 2h6eA 344 83.05 3bkxA 275 84.21 2gpyA 233 84.75 1dv1A 449 87.24 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3d2lA 243 88.71