# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2avnA 260 2.865 c.66.1.41 127380 1l7dA 384 3.040 c.2.1.4,c.23.12.2 77774,77775 1ve3A 227 4.014 c.66.1.43 120010 1h2bA 359 5.483 b.35.1.2,c.2.1.1 90543,90544 3bxoA 239 5.611 1fp2A 352 6.088 a.4.5.29,c.66.1.12 59941,59942 1pjcA 361 7.983 c.2.1.4,c.23.12.2 30101,31361 1fp1D 372 8.343 a.4.5.29,c.66.1.12 59939,59940 3c85A 183 12.24 2g1uA 155 12.46 1ls6A 295 12.90 c.37.1.5 91115 1x13A 401 14.39 1kjqA 391 14.64 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1f6yA 262 15.76 c.1.21.2 29673 2nxcA 254 17.17 c.66.1.39 138739 1ri5A 298 17.67 c.66.1.34 97502 2hmvA 144 18.54 c.2.1.9 136615 1lssA 140 18.62 c.2.1.9 74246 1qzzA 374 21.40 a.4.5.29,c.66.1.12 96719,96720 1qorA 327 22.81 b.35.1.2,c.2.1.1 24766,29782 3ladA 476 23.13 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1xtpA 254 23.45 c.66.1.42 116031 2aefA 234 24.10 2bg9E 370 24.86 1wxxA 382 25.81 b.122.1.9,c.66.1.51 121418,121419 1x9iA 302 26.63 c.80.1.1 114997 1bag 425 26.64 2bg9A 370 26.98 1i1nA 226 29.30 c.66.1.7 71102 1h1dA 221 30.83 c.66.1.1 83452 1kyzA 365 31.07 a.4.5.29,c.66.1.12 73312,73313 2ehbD 143 31.22 1y8cA 246 33.41 c.66.1.43 116563 1vid 221 33.55 2iidA 498 34.05 c.3.1.2,d.16.1.5 137426,137427 1reoA 486 34.90 c.3.1.2,d.16.1.5 97325,97326 2as0A 396 35.06 b.122.1.9,c.66.1.51 127227,127228 2pxxA 215 35.08 1kyqA 274 35.94 c.2.1.11,e.37.1.1 73281,73282 3by4A 212 36.91 2rbkA 261 37.38 2o28A 184 37.43 2frnA 278 37.66 c.66.1.47 133993 1ua7A 422 38.16 b.71.1.1,c.1.8.1 107759,107760 1uufA 369 38.54 b.35.1.2,c.2.1.1 100006,100007 1uirA 314 39.33 c.66.1.17 99429 1xvaA 292 41.22 c.66.1.5 34183 1zq9A 285 41.22 c.66.1.24 125505 2ogyA 262 44.71 1xdzA 240 44.86 c.66.1.20 115196 2h1rA 299 45.30 1p1cA 199 49.00 c.66.1.16 87669 1im8A 244 50.00 c.66.1.14 66212 1dusA 194 51.54 c.66.1.4 34182 1poiB 260 52.08 c.124.1.3 34155 1lehA 364 52.42 c.2.1.7,c.58.1.1 30268,33916 2q04A 211 53.31 2gwhA 298 55.29 1lqtA 456 58.19 c.3.1.1,c.4.1.1 74198,74199 1ux2A 212 59.42 b.96.1.1 100132 2dplA 308 62.44 1kevA 351 63.03 b.35.1.2,c.2.1.1 24749,29765 1zrhA 274 64.94 1ks9A 291 67.08 a.100.1.7,c.2.1.6 68857,68858 2fpoA 202 69.27 c.66.1.46 133909 2cf5A 357 70.96 1c1dA 355 71.91 c.2.1.7,c.58.1.1 30270,33918 2r3sA 335 76.38 2p7iA 250 76.53 1ne2A 200 76.92 c.66.1.32 85586 1lsuA 147 78.77 c.2.1.9 74250 1jvbA 347 79.66 b.35.1.2,c.2.1.1 77181,77182 1gesA 450 80.55 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2dulA 378 83.54 1igs 248 84.04 2rebA 352 87.09 c.37.1.11,d.48.1.1 32282,38767 1jqbA 351 87.61 b.35.1.2,c.2.1.1 77151,77152 2cdcA 366 88.55 1s3eA 520 89.45 c.3.1.2,d.16.1.5 98426,98427