# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7dA 384 1.959 c.2.1.4,c.23.12.2 77774,77775 1pjcA 361 4.690 c.2.1.4,c.23.12.2 30101,31361 1f6yA 262 6.195 c.1.21.2 29673 2rbkA 261 6.686 1h2bA 359 6.820 b.35.1.2,c.2.1.1 90543,90544 3bxoA 239 7.464 1ve3A 227 7.483 c.66.1.43 120010 2avnA 260 7.590 c.66.1.41 127380 1fp2A 352 7.810 a.4.5.29,c.66.1.12 59941,59942 1kjqA 391 9.606 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 3c85A 183 9.98 1x13A 401 10.27 1ls6A 295 12.21 c.37.1.5 91115 1uufA 369 12.90 b.35.1.2,c.2.1.1 100006,100007 1lssA 140 13.06 c.2.1.9 74246 2hmvA 144 13.78 c.2.1.9 136615 2g1uA 155 14.92 2nxcA 254 16.70 c.66.1.39 138739 2aefA 234 16.76 2frnA 278 17.37 c.66.1.47 133993 1reoA 486 18.41 c.3.1.2,d.16.1.5 97325,97326 1kyqA 274 19.48 c.2.1.11,e.37.1.1 73281,73282 1i1nA 226 19.59 c.66.1.7 71102 3ladA 476 20.36 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2ogyA 262 21.25 2as0A 396 21.25 b.122.1.9,c.66.1.51 127227,127228 2cf5A 357 24.57 1zrhA 274 26.47 1qzzA 374 27.69 a.4.5.29,c.66.1.12 96719,96720 1lehA 364 29.89 c.2.1.7,c.58.1.1 30268,33916 2gwhA 298 31.59 1bag 425 31.66 2dplA 308 31.86 1x9iA 302 32.02 c.80.1.1 114997 2ehbD 143 32.19 1qorA 327 35.09 b.35.1.2,c.2.1.1 24766,29782 2iidA 498 38.66 c.3.1.2,d.16.1.5 137426,137427 2h1rA 299 40.41 1poiB 260 41.17 c.124.1.3 34155 1fp1D 372 41.97 a.4.5.29,c.66.1.12 59939,59940 1xdzA 240 43.04 c.66.1.20 115196 1ua7A 422 44.02 b.71.1.1,c.1.8.1 107759,107760 1wxxA 382 45.35 b.122.1.9,c.66.1.51 121418,121419 3canA 182 46.06 2bg9A 370 46.65 2fk8A 318 47.16 c.66.1.18 133648 1lqtA 456 48.58 c.3.1.1,c.4.1.1 74198,74199 1kevA 351 48.68 b.35.1.2,c.2.1.1 24749,29765 2bg9E 370 49.17 1vid 221 49.81 1xvaA 292 50.43 c.66.1.5 34183 1mf7A 194 52.32 c.62.1.1 84937 1p91A 269 52.36 c.66.1.33 94378 1c1dA 355 54.12 c.2.1.7,c.58.1.1 30270,33918 2o28A 184 55.48 1uirA 314 56.06 c.66.1.17 99429 2hmaA 376 57.45 1h1dA 221 58.52 c.66.1.1 83452 2q04A 211 59.73 1nv8A 284 60.36 c.66.1.30 86224 1gesA 450 60.92 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2v3aA 384 61.50 1vkjA 285 61.52 c.37.1.5 108666 3by4A 212 61.55 1qyrA 252 62.29 c.66.1.24 104657 1jg1A 235 63.30 c.66.1.7 66661 1p1cA 199 64.71 c.66.1.16 87669 1d7yA 408 65.98 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1sqgA 429 66.93 a.79.1.3,c.66.1.38 105912,105913 1pvvA 315 67.57 c.78.1.1,c.78.1.1 95190,95191 1yqdA 366 67.63 1qamA 244 67.72 c.66.1.24 34220 1y8cA 246 68.38 c.66.1.43 116563 1pl8A 356 68.71 b.35.1.2,c.2.1.1 94878,94879 2bm8A 236 68.84 c.66.1.50 128771 2pxxA 215 69.03 1jvbA 347 70.49 b.35.1.2,c.2.1.1 77181,77182 1wyuA 438 70.99 c.67.1.7 121452 2fpoA 202 71.24 c.66.1.46 133909 2zbwA 335 71.38 2dpoA 319 71.79 1igs 248 77.95 1zq9A 285 81.71 c.66.1.24 125505 2cdcA 366 83.73 1q77A 138 84.69 c.26.2.4 96023 1ri5A 298 84.86 c.66.1.34 97502 1fmjA 351 85.62 c.37.1.5 59879 1dusA 194 86.00 c.66.1.4 34182 2rebA 352 87.63 c.37.1.11,d.48.1.1 32282,38767 1kyzA 365 88.67 a.4.5.29,c.66.1.12 73312,73313 3d2lA 243 88.94 1t8tA 271 89.34 c.37.1.5 106685