# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7dA 384 2.180 c.2.1.4,c.23.12.2 77774,77775 2avnA 260 3.030 c.66.1.41 127380 1ve3A 227 3.711 c.66.1.43 120010 3bxoA 239 4.916 1pjcA 361 5.337 c.2.1.4,c.23.12.2 30101,31361 1h2bA 359 5.571 b.35.1.2,c.2.1.1 90543,90544 1lssA 140 7.089 c.2.1.9 74246 1f6yA 262 7.989 c.1.21.2 29673 2rbkA 261 8.204 2g1uA 155 8.562 3c85A 183 9.764 1fp2A 352 10.07 a.4.5.29,c.66.1.12 59941,59942 1fp1D 372 10.24 a.4.5.29,c.66.1.12 59939,59940 2hmvA 144 10.65 c.2.1.9 136615 1x13A 401 11.53 2nxcA 254 13.32 c.66.1.39 138739 1ls6A 295 13.57 c.37.1.5 91115 2as0A 396 17.07 b.122.1.9,c.66.1.51 127227,127228 1kjqA 391 17.80 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1uufA 369 19.73 b.35.1.2,c.2.1.1 100006,100007 1ri5A 298 19.84 c.66.1.34 97502 1reoA 486 20.11 c.3.1.2,d.16.1.5 97325,97326 2ogyA 262 20.24 1i1nA 226 20.95 c.66.1.7 71102 2aefA 234 21.62 3ladA 476 22.66 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2frnA 278 23.71 c.66.1.47 133993 1qzzA 374 24.28 a.4.5.29,c.66.1.12 96719,96720 1bag 425 24.42 1xtpA 254 28.11 c.66.1.42 116031 2cf5A 357 28.30 2pxxA 215 29.99 2bg9A 370 30.00 2hmaA 376 30.08 1kyqA 274 30.22 c.2.1.11,e.37.1.1 73281,73282 2o28A 184 30.47 1gesA 450 31.09 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1lehA 364 31.29 c.2.1.7,c.58.1.1 30268,33916 2bg9E 370 31.44 2fk8A 318 32.05 c.66.1.18 133648 1ua7A 422 33.24 b.71.1.1,c.1.8.1 107759,107760 1wxxA 382 33.83 b.122.1.9,c.66.1.51 121418,121419 2ehbD 143 35.16 2q04A 211 35.30 1dusA 194 35.68 c.66.1.4 34182 1xdzA 240 37.69 c.66.1.20 115196 1y8cA 246 37.94 c.66.1.43 116563 1zq9A 285 37.98 c.66.1.24 125505 1xvaA 292 38.10 c.66.1.5 34183 2h1rA 299 38.14 1kpgA 287 40.59 c.66.1.18 68735 1qorA 327 40.79 b.35.1.2,c.2.1.1 24766,29782 1uirA 314 41.91 c.66.1.17 99429 1l1eA 287 42.11 c.66.1.18 73454 1x9iA 302 44.85 c.80.1.1 114997 1c1dA 355 45.04 c.2.1.7,c.58.1.1 30270,33918 1kyzA 365 45.87 a.4.5.29,c.66.1.12 73312,73313 1tw3A 360 47.31 a.4.5.29,c.66.1.12 107373,107374 1poiB 260 47.33 c.124.1.3 34155 1im8A 244 48.72 c.66.1.14 66212 1lsuA 147 50.17 c.2.1.9 74250 1p1cA 199 53.63 c.66.1.16 87669 1ir6A 424 53.89 c.107.1.2 71342 2fpoA 202 54.42 c.66.1.46 133909 1s3eA 520 54.75 c.3.1.2,d.16.1.5 98426,98427 1qamA 244 55.09 c.66.1.24 34220 2gwhA 298 55.73 2ip2A 334 56.18 1qyrA 252 59.15 c.66.1.24 104657 2iidA 498 59.82 c.3.1.2,d.16.1.5 137426,137427 1igs 248 59.92 1ks9A 291 65.67 a.100.1.7,c.2.1.6 68857,68858 1pvvA 315 67.40 c.78.1.1,c.78.1.1 95190,95191 3cggA 195 67.72 1vid 221 69.38 1zrhA 274 70.33 1kevA 351 70.80 b.35.1.2,c.2.1.1 24749,29765 2cdcA 366 72.95 1h1dA 221 74.32 c.66.1.1 83452 1d7yA 408 76.28 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1ne2A 200 77.82 c.66.1.32 85586 2o57A 297 78.83 1p91A 269 79.73 c.66.1.33 94378 1sur 215 79.84 1sqgA 429 82.95 a.79.1.3,c.66.1.38 105912,105913 1nv8A 284 83.99 c.66.1.30 86224 2v3aA 384 84.01 2v03A 303 84.63 1f3lA 321 85.12 c.66.1.6 59630 2p7iA 250 85.61 1mjfA 281 85.73 c.66.1.17 79198 2e58A 308 86.36 2dplA 308 87.58 2bm8A 236 87.95 c.66.1.50 128771 2rebA 352 88.17 c.37.1.11,d.48.1.1 32282,38767