# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bxoA 239 2.471 1h2bA 359 2.884 b.35.1.2,c.2.1.1 90543,90544 1kjqA 391 3.007 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2avnA 260 4.282 c.66.1.41 127380 1lsuA 147 4.833 c.2.1.9 74250 1lssA 140 4.999 c.2.1.9 74246 2hmvA 144 5.187 c.2.1.9 136615 1gsoA 431 5.193 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1qorA 327 5.750 b.35.1.2,c.2.1.1 24766,29782 1qzzA 374 7.031 a.4.5.29,c.66.1.12 96719,96720 1fp2A 352 8.011 a.4.5.29,c.66.1.12 59941,59942 2g1uA 155 8.156 1ve3A 227 8.288 c.66.1.43 120010 3c85A 183 8.702 2rbkA 261 8.925 1f6yA 262 9.506 c.1.21.2 29673 1eyzA 392 9.771 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1l7dA 384 11.24 c.2.1.4,c.23.12.2 77774,77775 1pjcA 361 12.06 c.2.1.4,c.23.12.2 30101,31361 1b6g 310 13.55 1ede 310 13.61 2nxcA 254 13.75 c.66.1.39 138739 1pjzA 203 15.24 c.66.1.36 94794 1lqtA 456 18.51 c.3.1.1,c.4.1.1 74198,74199 1zq9A 285 18.97 c.66.1.24 125505 1u2eA 289 19.67 1ir6A 424 20.86 c.107.1.2 71342 1vid 221 22.12 1z7wA 322 22.17 c.79.1.1 124674 2h1rA 299 22.61 1c1dA 355 22.75 c.2.1.7,c.58.1.1 30270,33918 1z7yA 322 22.77 c.79.1.1 124679 2ogyA 262 23.65 1h1dA 221 23.81 c.66.1.1 83452 3c6kA 381 23.99 1ehyA 294 25.40 c.69.1.11 34693 1ve1A 304 27.20 c.79.1.1 120007 1tx2A 297 28.02 c.1.21.1 107420 1y8cA 246 28.03 c.66.1.43 116563 1o58A 303 28.35 c.79.1.1 92491 1x13A 401 29.41 1broA 277 30.11 c.69.1.12 34700 1ua7A 422 30.51 b.71.1.1,c.1.8.1 107759,107760 1dv1A 449 31.74 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1bag 425 32.07 1ri5A 298 34.17 c.66.1.34 97502 1p91A 269 34.19 c.66.1.33 94378 3cvoA 202 35.11 1wxxA 382 35.70 b.122.1.9,c.66.1.51 121418,121419 1q1rA 431 35.86 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1jvbA 347 36.69 b.35.1.2,c.2.1.1 77181,77182 2aefA 234 36.96 2f8lA 344 37.09 c.66.1.45 133132 3d2lA 243 37.09 1ls6A 295 38.36 c.37.1.5 91115 2ax3A 502 39.15 c.72.1.4,c.104.1.1 127477,127478 1mtzA 293 39.26 c.69.1.7 79467 1qgdA 662 40.83 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1kpgA 287 43.08 c.66.1.18 68735 1brt 277 43.46 1gsa 316 45.24 2zbwA 335 45.48 1k20A 310 46.26 c.107.1.1 68027 1dusA 194 46.71 c.66.1.4 34182 1y7lA 316 47.47 c.79.1.1 122695 1bn7A 294 47.88 c.69.1.8 34677 2frnA 278 49.27 c.66.1.47 133993 2dc1A 236 49.85 1reoA 486 49.88 c.3.1.2,d.16.1.5 97325,97326 1tw3A 360 50.35 a.4.5.29,c.66.1.12 107373,107374 1m6iA 493 50.78 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2cduA 452 52.42 1z82A 335 53.30 1f8rA 498 53.55 c.3.1.2,d.16.1.5 30410,37974 1tqhA 247 53.64 c.69.1.29 107225 1nv8A 284 54.98 c.66.1.30 86224 2bg9E 370 55.20 2as0A 396 55.73 b.122.1.9,c.66.1.51 127227,127228 2cvjA 180 55.91 1zrhA 274 56.19 1id1A 153 57.00 c.2.1.9 62286 2vdvE 246 57.74 2fk8A 318 58.34 c.66.1.18 133648 1muwA 386 58.52 c.1.15.3 79495 1hkhA 279 58.96 c.69.1.12 90628 2h00A 254 59.02 c.66.1.54 135925 1xqwA 293 59.14 2qfmA 364 59.80 2q04A 211 59.97 1l1eA 287 60.52 c.66.1.18 73454 1cjcA 460 61.09 c.3.1.1,c.4.1.1 30319,30604 1a88A 275 63.35 c.69.1.12 34707 1va4A 279 65.40 c.69.1.12 108458 3xis 387 65.44 2cvhA 220 66.55 1odzA 386 66.83 c.1.8.3 86889 1d7yA 408 68.30 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1tzlA 622 69.72 c.3.1.2,d.16.1.1 112876,112877 2pxxA 215 69.77 1ad1A 266 70.08 c.1.21.1 29668 1kyqA 274 70.29 c.2.1.11,e.37.1.1 73281,73282 1a8qA 274 70.98 c.69.1.12 34702 2eihA 343 71.04 1r1dA 247 73.78 c.69.1.29 96813 1kevA 351 74.82 b.35.1.2,c.2.1.1 24749,29765 1d4fA 431 75.09 c.2.1.4,c.23.12.3 30110,31370 2p7iA 250 75.63 2ffiA 288 76.19 c.1.9.15 133385 2bg9A 370 78.13 3c3jA 384 78.39 1hdoA 206 79.07 c.2.1.2 60965 1xvaA 292 79.71 c.66.1.5 34183 2pjdA 343 81.36 1rpnA 335 82.46 c.2.1.2 97708 2ip2A 334 83.36 1aj2 282 83.73 1n7hA 381 84.47 c.2.1.2 80250 4xis 387 85.39 1a0dA 440 87.39 c.1.15.3 29533 2v03A 303 88.20 3ladA 476 88.38 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208