# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1qorA 327 0.6176 b.35.1.2,c.2.1.1 24766,29782 2avnA 260 0.9273 c.66.1.41 127380 1kjqA 391 1.036 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 3bxoA 239 1.087 1qzzA 374 2.814 a.4.5.29,c.66.1.12 96719,96720 1h2bA 359 2.888 b.35.1.2,c.2.1.1 90543,90544 1ve3A 227 3.122 c.66.1.43 120010 1fp1D 372 3.456 a.4.5.29,c.66.1.12 59939,59940 2nxcA 254 5.592 c.66.1.39 138739 1pjzA 203 5.625 c.66.1.36 94794 1fp2A 352 5.731 a.4.5.29,c.66.1.12 59941,59942 1f6yA 262 6.816 c.1.21.2 29673 1gsoA 431 6.819 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1h1dA 221 7.305 c.66.1.1 83452 1eyzA 392 7.438 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1vid 221 8.160 2eihA 343 8.739 1tw3A 360 9.805 a.4.5.29,c.66.1.12 107373,107374 1y8cA 246 10.17 c.66.1.43 116563 1lqtA 456 10.30 c.3.1.1,c.4.1.1 74198,74199 1pjcA 361 10.63 c.2.1.4,c.23.12.2 30101,31361 1kyzA 365 10.69 a.4.5.29,c.66.1.12 73312,73313 1ri5A 298 11.99 c.66.1.34 97502 3d2lA 243 12.12 1kpgA 287 12.90 c.66.1.18 68735 1l1eA 287 14.35 c.66.1.18 73454 2ogyA 262 15.81 1lehA 364 16.31 c.2.1.7,c.58.1.1 30268,33916 1ua7A 422 16.56 b.71.1.1,c.1.8.1 107759,107760 1bag 425 16.91 1dv1A 449 17.07 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2hmvA 144 19.61 c.2.1.9 136615 2r3sA 335 19.71 1jvbA 347 22.23 b.35.1.2,c.2.1.1 77181,77182 2d8aA 348 22.66 1zq9A 285 23.37 c.66.1.24 125505 2as0A 396 24.11 b.122.1.9,c.66.1.51 127227,127228 2i1qA 322 24.72 a.60.4.1,c.37.1.11 136984,136985 2rbkA 261 24.87 1yzhA 214 25.61 c.66.1.53 124277 1c1dA 355 25.63 c.2.1.7,c.58.1.1 30270,33918 2ze0A 555 26.49 1u2eA 289 26.77 1p91A 269 27.36 c.66.1.33 94378 1igs 248 27.58 1xtpA 254 27.79 c.66.1.42 116031 1i4wA 353 28.78 c.66.1.24 66028 2aefA 234 28.99 2dbqA 334 29.61 1tx2A 297 30.02 c.1.21.1 107420 1kevA 351 31.01 b.35.1.2,c.2.1.1 24749,29765 1lssA 140 31.10 c.2.1.9 74246 1x19A 359 31.63 1kyqA 274 32.22 c.2.1.11,e.37.1.1 73281,73282 1ls6A 295 32.38 c.37.1.5 91115 1qyrA 252 32.98 c.66.1.24 104657 3c85A 183 33.63 1gsa 316 33.68 1l7dA 384 34.43 c.2.1.4,c.23.12.2 77774,77775 1xvaA 292 34.67 c.66.1.5 34183 2hmaA 376 34.90 1ir6A 424 35.16 c.107.1.2 71342 2pxxA 215 37.16 1cs0A 1073 37.22 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2cduA 452 38.59 2v3gA 283 39.01 2cl5A 221 39.89 c.66.1.1 130570 1pl8A 356 40.01 b.35.1.2,c.2.1.1 94878,94879 3cggA 195 40.58 2basA 431 40.80 c.1.33.1,d.110.6.2 128244,128245 2bzgA 232 41.16 c.66.1.36 129559 3cc8A 230 41.32 2frnA 278 41.85 c.66.1.47 133993 1wznA 252 42.15 c.66.1.43 121525 1im8A 244 42.55 c.66.1.14 66212 2fk8A 318 42.82 c.66.1.18 133648 1f3lA 321 44.93 c.66.1.6 59630 1vj0A 380 45.06 b.35.1.2,c.2.1.1 100786,100787 2ax3A 502 45.83 c.72.1.4,c.104.1.1 127477,127478 1ne2A 200 45.85 c.66.1.32 85586 1jqbA 351 46.46 b.35.1.2,c.2.1.1 77151,77152 2cdcA 366 46.61 1e3jA 352 46.65 b.35.1.2,c.2.1.1 24765,29781 1qgdA 662 47.02 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1ks9A 291 47.19 a.100.1.7,c.2.1.6 68857,68858 1ad1A 266 50.02 c.1.21.1 29668 1nhp 447 50.13 1va4A 279 50.13 c.69.1.12 108458 1cjcA 460 52.02 c.3.1.1,c.4.1.1 30319,30604 1xxlA 239 52.59 c.66.1.41 116203 1tzlA 622 53.51 c.3.1.2,d.16.1.1 112876,112877 3c6kA 381 54.40 2f8lA 344 55.02 c.66.1.45 133132 1nytA 271 55.21 c.2.1.7,c.58.1.5 86417,86418 2q04A 211 55.56 2zbwA 335 58.71 1hdoA 206 61.35 c.2.1.2 60965 2o57A 297 61.38 2hk9A 275 61.68 1broA 277 61.69 c.69.1.12 34700 2ex4A 241 65.66 c.66.1.42 132516 3ladA 476 65.78 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1wlyA 333 67.46 1o2dA 371 67.95 e.22.1.2 86591 1nv8A 284 69.34 c.66.1.30 86224 1b6g 310 69.44 2g1uA 155 69.54 1brt 277 69.85 2p7iA 250 70.29 2ew2A 316 70.76 1ede 310 71.46 1x13A 401 74.17 1reoA 486 74.47 c.3.1.2,d.16.1.5 97325,97326 2hqyA 305 74.63 1u94A 356 75.04 c.37.1.11,d.48.1.1 107743,107744 1gdhA 320 75.31 c.2.1.4,c.23.12.1 30095,31355 2gwhA 298 75.72 2ip2A 334 78.00 1xdzA 240 78.54 c.66.1.20 115196 2ouiA 360 79.98 2pn1A 331 80.26 1dusA 194 82.26 c.66.1.4 34182 1gesA 450 83.97 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1trb 320 85.17 1k77A 260 86.04 c.1.15.5 72096 1lsuA 147 86.08 c.2.1.9 74250 1zrhA 274 86.63 2h1rA 299 86.83 1a88A 275 87.71 c.69.1.12 34707 2fcaA 213 88.12 c.66.1.53 133262 2gb4A 252 88.20 3d64A 494 88.73 1o0yA 260 88.82 c.1.10.1 80756 1d7yA 408 88.84 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1bg6 359 89.00 3bgvA 313 89.13 1ta9A 450 89.37 1d4fA 431 89.79 c.2.1.4,c.23.12.3 30110,31370