# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c5aA 379 2.074 c.2.1.2 129894 1ks9A 291 4.083 a.100.1.7,c.2.1.6 68857,68858 1pjzA 203 5.070 c.66.1.36 94794 1xm7A 195 5.174 d.159.1.8 115473 1gdeA 389 5.175 c.67.1.1 60456 2qa1A 500 5.421 1w7lA 422 5.677 c.67.1.1 109226 1yizA 429 5.958 c.67.1.1 123375 1q1rA 431 6.010 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3bxoA 239 6.258 1pjqA 457 6.726 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 3d64A 494 7.824 3d2lA 243 8.701 1w24A 182 8.760 d.159.1.7 120579 1v2dA 381 8.965 c.67.1.1 108281 2douA 376 9.219 2avnA 260 9.346 c.66.1.41 127380 2qedA 258 11.96 1xq6A 253 12.17 c.2.1.2 115829 1k0iA 394 12.44 c.3.1.2,d.16.1.2 67942,67943 2ogeA 399 12.46 1y8qA 346 12.59 2o0rA 411 12.87 1qydA 313 12.97 c.2.1.2 96583 1y8qB 640 13.34 1d2fA 390 13.39 c.67.1.3 34411 1c7nA 399 13.60 c.67.1.3 34413 1o4sA 389 13.61 c.67.1.1 86620 2q46A 253 13.84 c.2.1.2 139825 3b46A 447 14.15 1fp1D 372 14.78 a.4.5.29,c.66.1.12 59939,59940 1z7bA 358 14.83 c.2.1.2 124599 1ve3A 227 14.84 c.66.1.43 120010 3bn1A 373 15.07 2bkaA 242 15.29 c.2.1.2 128666 1oc2A 348 15.64 c.2.1.2 92765 2ggsA 273 16.49 2gqwA 408 16.65 1qzzA 374 17.74 a.4.5.29,c.66.1.12 96719,96720 1im8A 244 18.80 c.66.1.14 66212 2exxA 306 18.97 2a22A 215 19.12 d.159.1.7 126025 1ykjA 394 19.55 2v3aA 384 19.69 1d7yA 408 19.71 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1ve1A 304 19.77 c.79.1.1 120007 1pbe 394 20.07 3grs 478 20.43 1j32A 388 20.51 c.67.1.1 77067 1xcbA 211 21.09 a.4.5.38,c.2.1.12 109552,109553 2po3A 424 21.29 1sb8A 352 22.12 c.2.1.2 105410 1kjqA 391 22.16 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1x2gA 337 22.19 1nw3A 416 22.37 c.66.1.31 86288 1u2zA 433 22.57 c.66.1.31 107626 3cgvA 397 23.32 2pxxA 215 23.51 2p4hX 322 23.76 3grsA 478 23.81 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1dv1A 449 24.17 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2hmaA 376 24.31 1y1pA 342 25.30 c.2.1.2 122550 2obwA 258 26.43 1m6iA 493 26.47 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1n2eA 300 27.04 c.26.1.4 85268 1b5pA 385 27.34 c.67.1.1 90403 2cvjA 180 27.40 1zq9A 285 27.46 c.66.1.24 125505 1nhpA 447 27.54 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2ri0A 234 28.28 2gb3A 409 29.11 c.67.1.1 134903 2ejbA 189 29.58 1z7yA 322 30.40 c.79.1.1 124679 1wznA 252 30.78 c.66.1.43 121525 1hdoA 206 31.24 c.2.1.2 60965 1o69A 394 31.57 c.67.1.4 92560 1l1eA 287 32.05 c.66.1.18 73454 1ri5A 298 33.52 c.66.1.34 97502 2bllA 345 33.57 c.2.1.2 128733 1zq6A 359 33.80 2a84A 300 34.35 c.26.1.4 126389 1fp2A 352 34.76 a.4.5.29,c.66.1.12 59941,59942 1nhp 447 34.91 1yovA 537 34.91 c.111.1.2 123785 1nhsA 447 35.43 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1xm8A 254 36.54 d.157.1.2 115475 2i6gA 199 36.66 c.66.1.44 137096 2v74B 346 36.95 1z7wA 322 37.58 c.79.1.1 124674 1fmtA 314 37.62 b.46.1.1,c.65.1.1 25758,34174 1v8bA 479 38.01 c.2.1.4,c.23.12.3 113564,113565 2c29D 337 40.78 3b3fA 341 41.22 3bkxA 275 42.14 1lhpA 312 42.95 c.72.1.5 77960 1ir6A 424 43.04 c.107.1.2 71342 1a9xA 1058 43.88 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 3b89A 252 44.13 1tw3A 360 44.56 a.4.5.29,c.66.1.12 107373,107374 1fl2A 310 45.79 c.3.1.5,c.3.1.5 59869,59870 2pbfA 227 45.84 2ahdA 165 47.05 d.159.1.7 126752 1ez4A 318 47.77 c.2.1.5,d.162.1.1 64917,64918 2cmd 312 48.53 2b69A 343 48.63 c.2.1.2 127974 1wx1A 335 49.46 1jg1A 235 50.26 c.66.1.7 66661 2axqA 467 50.27 1rkxA 357 50.84 c.2.1.2 97631 1eyzA 392 51.60 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1d0vA 356 51.94 c.39.1.1 32476 1ni5A 433 52.30 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2c81A 418 52.75 1l3iA 192 53.48 c.66.1.22 77676 1i36A 264 53.86 a.100.1.8,c.2.1.6 71108,71109 1x19A 359 53.90 1u08A 386 54.35 c.67.1.1 107543 1qycA 308 55.32 c.2.1.2 96581 1l5oA 356 55.39 c.39.1.1 77711 2eq6A 464 55.69 1dl5A 317 55.74 c.66.1.7,d.197.1.1 64720,64721 1bw0A 416 56.31 c.67.1.1 34385 2zbwA 335 57.65 1z45A 699 58.85 b.30.5.4,c.2.1.2 124427,124428 1pbeA 394 59.52 c.3.1.2,d.16.1.2 30338,37869 1vb5A 276 59.77 c.124.1.5 113604 2yxtA 312 59.85 1j33A 335 60.62 c.39.1.1 77069 1vefA 395 60.76 c.67.1.4 120018 1ff9A 450 62.14 c.2.1.3,d.81.1.2 30039,39954 1d4fA 431 63.44 c.2.1.4,c.23.12.3 30110,31370 1gsoA 431 63.76 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1f3lA 321 63.82 c.66.1.6 59630 3bkwA 243 64.34 1qp8A 303 64.60 c.2.1.4,c.23.12.1 30092,31352 1u3wA 374 64.89 b.35.1.2,c.2.1.1 113013,113014 1z2wA 192 64.89 d.159.1.7 124390 1u9jA 358 65.13 c.2.1.2 113243 1bjwA 382 65.56 c.67.1.1 34349 2culA 232 65.88 c.3.1.7 130813 1b9hA 388 66.57 c.67.1.4 34488 2o3jA 481 67.30 1s3iA 310 67.98 b.46.1.1,c.65.1.1 98435,98436 1trb 320 68.00 1jf9A 408 68.11 c.67.1.3 62931 2pk3A 321 68.59 1lc5A 364 69.40 c.67.1.1 73827 1qh5A 260 70.10 d.157.1.2 42057 1xel 338 70.13 1mv8A 436 70.66 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1rpnA 335 71.08 c.2.1.2 97708 2fytA 340 71.42 c.66.1.6 134391 1bg6 359 72.18 1dliA 402 72.64 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2fk8A 318 72.73 c.66.1.18 133648 1xvaA 292 73.21 c.66.1.5 34183 1dv2A 452 73.98 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2gn4A 344 74.47 1rcuA 195 74.65 c.129.1.1 97295 2r6jA 318 75.71 1x13A 401 76.31 1mdoA 393 76.40 c.67.1.4 79013 1f74A 293 76.74 c.1.10.1 29079 1c0pA 363 77.41 c.4.1.2,d.16.1.3 30647,37934 2blnA 305 77.68 b.46.1.1,c.65.1.1 128734,128735 1c1dA 355 78.45 c.2.1.7,c.58.1.1 30270,33918 1o8xA 146 79.60 c.47.1.10 86681 1jxhA 288 81.87 c.72.1.2 67415 2a1fA 247 82.93 c.73.1.3 125991 2fnuA 375 82.96 c.67.1.4 133831 2eh6A 375 82.98 3c24A 286 83.42 2yxeA 215 83.49 1drw 273 83.90 2dr3A 247 83.95 2f7kA 327 85.42 1wg8A 285 85.54 a.60.13.1,c.66.1.23 114605,114606 1xwfA 431 85.65 c.2.1.4,c.23.12.3 122392,122393 3bcxA 437 86.41 1txgA 335 86.57 a.100.1.6,c.2.1.6 112775,112776 2fhpA 187 86.74 c.66.1.46 133495 2q3bA 313 87.58 2nvrA 423 87.86 1p91A 269 88.22 c.66.1.33 94378 2ibtA 421 88.79 c.66.1.27,d.287.1.1 137205,137206 1qk8A 146 89.72 c.47.1.10 33061