# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 1.04e-27 3b57A 209 6.51e-24 2pq7A 220 5.43e-16 2ogiA 196 0.000104 3ccgA 190 0.000108 2dqbA 376 0.001772 2hekA 371 0.002251 a.211.1.1 136354 1xx7A 184 0.002381 a.211.1.1 116143 2o08A 188 0.002411 2paqA 201 0.02947 a.211.1.1 139643 2q14A 410 0.05833 1u6zA 513 0.06005 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1ynbA 173 0.06425 a.211.1.1 123718 2parA 201 0.1930 1yoyA 175 0.2257 a.211.1.1 123795 1vqrA 297 0.3179 a.211.1.3 114015 2r8qA 359 0.7139 2pgsA 451 0.7675 2ovyA 362 1.297 2ousA 331 1.433 1wxiA 275 1.642 c.26.2.1 121400 1rkpA 326 2.918 a.211.1.2 97620 1h6pA 203 3.492 a.146.1.1 60690 2hd1A 326 3.712 a.211.1.2 136338 1miwA 404 3.790 a.173.1.1,d.218.1.4 79162,79163 1y2kA 349 4.016 a.211.1.2 122571 3bg2A 444 4.313 1tbbA 332 4.439 a.211.1.2 106741 1tbfA 347 7.446 a.211.1.2 106743 1wpnA 188 7.530 c.107.1.1 114826 1k7cA 233 8.515 c.23.10.4 68267 1zklA 353 9.655 1tazA 365 9.831 a.211.1.2 106734 1vj7A 393 10.40 a.211.1.1,d.218.1.8 100801,100802 1pv0A 46 12.72 a.2.12.1 95141 1khyA 148 12.91 a.174.1.1 77410 2j4jA 226 12.91 1f0jA 377 19.76 a.211.1.2 19346 1ecmA 109 19.99 a.130.1.1 19492 1nxuA 333 23.27 c.122.1.1 86389 1j3eA 115 25.64 d.228.1.1 103834 1aj9A 141 28.65 a.1.1.2 15332 1r5rA 119 29.39 a.39.2.1 97104 1wtjA 343 30.93 2gz4A 207 34.99 1rfmA 344 35.05 c.122.1.1 97385 1spgA 144 37.51 a.1.1.2 15409 2bylA 439 38.98 c.67.1.4 129490 1a3oA 141 43.18 a.1.1.2 15274 1b1bA 140 44.51 a.4.5.24,a.76.1.1 16215,18421 1xrhA 351 45.16 c.122.1.1 115871 1gcwB 135 46.62 a.1.1.2 15591 2dkb 433 48.66 1zud2 66 49.09 2is9A 204 51.62 2oqcA 327 55.29 1vbiA 344 55.35 1bg6 359 55.62 2byjA 439 56.44 c.67.1.4 129483 2nygA 273 58.10 3bomB 147 58.15 2g8yA 385 59.00 1w7jA 795 59.09 b.34.3.1,c.37.1.9 120688,120689 1dlwA 116 59.37 a.1.1.1 14982 1v9nA 360 59.77 1lybA 97 60.19 b.50.1.2 26857 1lrzA 426 60.46 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1z2iA 358 61.48 1i74A 309 61.66 c.107.1.1 61867 2r98A 456 62.16 1volA 204 65.20 a.74.1.2,a.74.1.2 18370,18371 1v4xB 146 66.52 a.1.1.2 108364 1vfgA 390 66.92 a.173.1.1,d.218.1.4 108570,108571 2ibnA 250 67.51 a.211.1.4 137195 1lrrA 131 69.24 d.228.1.1 78165 1a4fA 141 70.38 a.1.1.2 15394 2pb2A 420 72.00 1idrA 136 72.61 a.1.1.1 62301 3bomA 142 77.67 1irdA 141 79.19 a.1.1.2 66286 1cukA 203 79.29 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1j7yA 141 80.82 a.1.1.2 66426 1on2A 142 81.19 a.4.5.24,a.76.1.1 87103,87104 2azqA 311 81.34 1f5tA 121 81.70 a.4.5.24,a.76.1.1 16203,18409 1wmuA 141 81.93 a.1.1.2 109416 1qhfA 240 83.64 c.60.1.1 33960 1gcvB 136 85.24 a.1.1.2 15589 1xszA 356 85.32 a.118.3.1,d.129.9.1 116005,116006 1d3uB 201 85.36 a.74.1.2,a.74.1.2 18386,18387 1k20A 310 87.03 c.107.1.1 68027 2cviA 83 87.64