# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 8.31e-29 3b57A 209 3.58e-25 2pq7A 220 8.86e-17 2ogiA 196 3.71e-05 3ccgA 190 6.60e-05 2hekA 371 0.000862 a.211.1.1 136354 2dqbA 376 0.000871 1xx7A 184 0.001243 a.211.1.1 116143 2o08A 188 0.002000 2paqA 201 0.008217 a.211.1.1 139643 2q14A 410 0.01252 1u6zA 513 0.02450 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1ynbA 173 0.02968 a.211.1.1 123718 2parA 201 0.05175 1vqrA 297 0.1055 a.211.1.3 114015 1yoyA 175 0.1978 a.211.1.1 123795 2pgsA 451 0.2385 2r8qA 359 0.3727 2ovyA 362 0.5222 2ousA 331 0.5964 1y2kA 349 0.7388 a.211.1.2 122571 1rkpA 326 0.7853 a.211.1.2 97620 1tbbA 332 0.9128 a.211.1.2 106741 2hd1A 326 1.415 a.211.1.2 136338 1wxiA 275 1.839 c.26.2.1 121400 1tbfA 347 1.953 a.211.1.2 106743 1zklA 353 2.207 3bg2A 444 2.234 1miwA 404 2.639 a.173.1.1,d.218.1.4 79162,79163 1tazA 365 3.582 a.211.1.2 106734 1f0jA 377 4.340 a.211.1.2 19346 1h6pA 203 5.229 a.146.1.1 60690 1k7cA 233 9.867 c.23.10.4 68267 1wpnA 188 11.71 c.107.1.1 114826 1vj7A 393 12.13 a.211.1.1,d.218.1.8 100801,100802 2j4jA 226 13.35 1aj9A 141 14.05 a.1.1.2 15332 1pv0A 46 15.19 a.2.12.1 95141 1nxuA 333 15.61 c.122.1.1 86389 1gcwB 135 17.09 a.1.1.2 15591 1ecmA 109 17.37 a.130.1.1 19492 1wtjA 343 18.31 1spgA 144 20.19 a.1.1.2 15409 1khyA 148 20.19 a.174.1.1 77410 1a3oA 141 20.65 a.1.1.2 15274 1lrzA 426 24.45 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1lybA 97 25.14 b.50.1.2 26857 1rfmA 344 26.72 c.122.1.1 97385 1vbiA 344 27.01 1xrhA 351 27.08 c.122.1.1 115871 1a4fA 141 27.92 a.1.1.2 15394 1glqA 209 30.60 a.45.1.1,c.47.1.5 17588,32882 2oqcA 327 31.62 1z2iA 358 32.65 1vfgA 390 32.98 a.173.1.1,d.218.1.4 108570,108571 3bomB 147 33.26 2d68A 82 35.12 1j3eA 115 35.54 d.228.1.1 103834 1v4xB 146 35.99 a.1.1.2 108364 2r98A 456 37.97 1irdA 141 38.08 a.1.1.2 66286 1j7yA 141 38.64 a.1.1.2 66426 1b1bA 140 39.93 a.4.5.24,a.76.1.1 16215,18421 2gz4A 207 40.16 1v4xA 144 40.59 a.1.1.2 108363 3bomA 142 42.49 3bg1B 442 42.63 2h8fA 143 44.35 a.1.1.2 136239 1gcvB 136 45.78 a.1.1.2 15589 1wmuA 141 45.80 a.1.1.2 109416 1dxtB 147 46.80 a.1.1.2 15450 1o5hA 214 49.16 a.191.1.1 92497 1spgB 147 50.76 a.1.1.2 15588 2ibnA 250 52.03 a.211.1.4 137195 2ia7A 134 53.83 2g8yA 385 54.32 1w07A 659 57.37 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1v9nA 360 60.61 2is9A 204 65.05 1xszA 356 65.49 a.118.3.1,d.129.9.1 116005,116006 1z1lA 345 66.22 2imsA 171 66.89 1eemA 241 71.30 a.45.1.1,c.47.1.5 17717,33011 1ab8A 220 72.40 d.58.29.1 39414 1r5rA 119 73.43 a.39.2.1 97104 1xw5A 217 74.17 a.45.1.1,c.47.1.5 116099,116100 2hf0A 316 74.38 1irdB 146 75.16 a.1.1.2 66287 2d5xA 141 75.80 a.1.1.2 131282 1b5fA 239 77.46 b.50.1.2 26836 2dkb 433 80.73 1d3uB 201 81.28 a.74.1.2,a.74.1.2 18386,18387 1vg0A 650 82.69 c.3.1.3,d.16.1.6 108596,108597 1babA 143 83.12 a.1.1.2 15235 2j017 49 83.89 1w7jA 795 85.43 b.34.3.1,c.37.1.9 120688,120689 1i74A 309 89.32 c.107.1.1 61867 1idrA 136 89.70 a.1.1.1 62301