# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 6.12e-29 3b57A 209 1.36e-25 2pq7A 220 1.39e-17 3ccgA 190 1.99e-05 2ogiA 196 5.25e-05 2o08A 188 0.000317 2dqbA 376 0.000825 2hekA 371 0.001387 a.211.1.1 136354 1xx7A 184 0.001755 a.211.1.1 116143 1u6zA 513 0.01571 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2parA 201 0.02554 2paqA 201 0.02578 a.211.1.1 139643 2q14A 410 0.03862 1vqrA 297 0.05232 a.211.1.3 114015 1ynbA 173 0.1580 a.211.1.1 123718 1yoyA 175 0.1675 a.211.1.1 123795 1rkpA 326 0.6619 a.211.1.2 97620 2r8qA 359 0.6718 2pgsA 451 0.8210 2hd1A 326 1.119 a.211.1.2 136338 1y2kA 349 1.197 a.211.1.2 122571 1miwA 404 1.228 a.173.1.1,d.218.1.4 79162,79163 2ovyA 362 1.245 1tbfA 347 1.343 a.211.1.2 106743 1tazA 365 1.444 a.211.1.2 106734 1tbbA 332 1.531 a.211.1.2 106741 2ousA 331 2.015 1khyA 148 2.930 a.174.1.1 77410 1h6pA 203 4.078 a.146.1.1 60690 1k7cA 233 4.473 c.23.10.4 68267 1nxuA 333 5.333 c.122.1.1 86389 1zklA 353 5.913 3bg2A 444 6.238 1pv0A 46 6.373 a.2.12.1 95141 1wxiA 275 6.781 c.26.2.1 121400 1rfmA 344 6.860 c.122.1.1 97385 1wpnA 188 6.881 c.107.1.1 114826 1j3eA 115 7.137 d.228.1.1 103834 1wtjA 343 7.436 1f0jA 377 8.191 a.211.1.2 19346 1vj7A 393 8.783 a.211.1.1,d.218.1.8 100801,100802 1ecmA 109 9.335 a.130.1.1 19492 1xrhA 351 9.826 c.122.1.1 115871 2j4jA 226 10.13 1vbiA 344 11.44 1z2iA 358 11.74 2is9A 204 15.83 1lrzA 426 15.99 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2p71A 132 16.54 a.39.2.1 139516 1v9nA 360 17.17 2d68A 82 18.59 1b1bA 140 19.23 a.4.5.24,a.76.1.1 16215,18421 1volA 204 19.72 a.74.1.2,a.74.1.2 18370,18371 1qwvA 142 22.02 a.39.2.1 96506 3cz6A 168 22.79 2vc7A 314 22.89 1lrrA 131 23.62 d.228.1.1 78165 2g8yA 385 24.23 1z1lA 345 30.43 1d3uB 201 31.28 a.74.1.2,a.74.1.2 18386,18387 1aj9A 141 31.47 a.1.1.2 15332 1lybA 97 31.66 b.50.1.2 26857 1glqA 209 36.99 a.45.1.1,c.47.1.5 17588,32882 1i74A 309 37.17 c.107.1.1 61867 1vpdA 299 37.44 a.100.1.1,c.2.1.6 113951,113952 1vhxA 150 37.50 c.55.3.8 100712 1b4pA 217 38.07 a.45.1.1,c.47.1.5 83158,83159 6gsvA 217 40.98 a.45.1.1,c.47.1.5 17633,32925 1dqeA 137 44.60 a.39.2.1 17388 1eemA 241 44.95 a.45.1.1,c.47.1.5 17717,33011 1gcwB 135 45.67 a.1.1.2 15591 1dlwA 116 46.12 a.1.1.1 14982 2dc4A 165 46.15 1c9bA 207 49.94 a.74.1.2,a.74.1.2 18372,18373 2gz4A 207 51.46 2ibnA 250 52.60 a.211.1.4 137195 1k20A 310 53.37 c.107.1.1 68027 1fx7A 230 53.96 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1f5tA 121 54.78 a.4.5.24,a.76.1.1 16203,18409 1v54A 514 56.34 f.24.1.1 100321 2f6lA 166 56.77 a.130.1.4 133049 1a3oA 141 59.22 a.1.1.2 15274 2d2jA 329 59.68 c.1.9.3 131175 1r5rA 119 61.50 a.39.2.1 97104 2zc2A 78 61.55 1sedA 117 61.93 a.219.1.1 105449 1dwkA 156 62.57 a.35.1.4,d.72.1.1 17075,39606 1xw5A 217 63.45 a.45.1.1,c.47.1.5 116099,116100 1f3aA 222 64.14 a.45.1.1,c.47.1.5 17701,32995 1idrA 136 64.17 a.1.1.1 62301 1w7jA 795 64.44 b.34.3.1,c.37.1.9 120688,120689 1a0fA 201 65.58 a.45.1.1,c.47.1.5 17737,33031 1bg6 359 65.69 2cviA 83 68.22 2nu8B 388 70.20 1spgA 144 71.10 a.1.1.2 15409 2qtcA 886 71.59 1ztcA 221 78.10 d.157.1.11 125635 3ldh 330 81.57 i.12.1.1 46015 1on2A 142 81.73 a.4.5.24,a.76.1.1 87103,87104 2hnhA 910 82.02 2frhA 127 82.20 a.4.5.28 133988 1ijxA 127 84.10 a.141.1.1 62511 2fbiA 142 85.15 a.4.5.28 133246 2j017 49 86.77 2hnlA 225 87.46 2dkb 433 87.57