# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 5.02e-25 3b57A 209 1.45e-21 2pq7A 220 4.46e-15 2ogiA 196 0.000151 3ccgA 190 0.000182 2o08A 188 0.001003 2dqbA 376 0.001791 2hekA 371 0.002870 a.211.1.1 136354 1xx7A 184 0.003651 a.211.1.1 116143 2paqA 201 0.02264 a.211.1.1 139643 2q14A 410 0.04908 1ynbA 173 0.05888 a.211.1.1 123718 1u6zA 513 0.07845 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2parA 201 0.1444 1vqrA 297 0.2234 a.211.1.3 114015 1yoyA 175 0.2708 a.211.1.1 123795 2hd1A 326 0.3265 a.211.1.2 136338 2pgsA 451 0.3970 2ousA 331 0.4501 2ovyA 362 0.5187 2r8qA 359 0.5277 1rkpA 326 0.6319 a.211.1.2 97620 1tbfA 347 0.6932 a.211.1.2 106743 1y2kA 349 0.8190 a.211.1.2 122571 1tbbA 332 0.8800 a.211.1.2 106741 1zklA 353 1.560 1f0jA 377 2.577 a.211.1.2 19346 1wxiA 275 3.586 c.26.2.1 121400 1h6pA 203 3.844 a.146.1.1 60690 1tazA 365 4.071 a.211.1.2 106734 1miwA 404 4.250 a.173.1.1,d.218.1.4 79162,79163 3bg2A 444 4.815 1vj7A 393 8.899 a.211.1.1,d.218.1.8 100801,100802 1z1lA 345 9.247 1wpnA 188 10.29 c.107.1.1 114826 2j4jA 226 13.15 1k7cA 233 16.58 c.23.10.4 68267 1aj9A 141 20.86 a.1.1.2 15332 1khyA 148 22.44 a.174.1.1 77410 1pv0A 46 23.15 a.2.12.1 95141 1nxuA 333 27.17 c.122.1.1 86389 1a3oA 141 27.62 a.1.1.2 15274 2ibnA 250 32.46 a.211.1.4 137195 1gcwB 135 32.86 a.1.1.2 15591 1spgA 144 36.69 a.1.1.2 15409 1dxtB 147 37.89 a.1.1.2 15450 1wtjA 343 39.92 1a4fA 141 40.38 a.1.1.2 15394 2gz4A 207 41.43 1vbiA 344 41.78 3bomB 147 42.41 1j3eA 115 43.30 d.228.1.1 103834 1irdA 141 43.33 a.1.1.2 66286 2d68A 82 43.80 1gcvB 136 47.45 a.1.1.2 15589 1v4xB 146 47.77 a.1.1.2 108364 1j7yA 141 48.98 a.1.1.2 66426 1ecmA 109 50.08 a.130.1.1 19492 1i74A 309 50.94 c.107.1.1 61867 1b1bA 140 51.52 a.4.5.24,a.76.1.1 16215,18421 1lrzA 426 52.62 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2is9A 204 53.72 1on2A 142 54.48 a.4.5.24,a.76.1.1 87103,87104 1cg5A 141 54.72 a.1.1.2 15406 2oqcA 327 55.11 1lybA 97 56.10 b.50.1.2 26857 3bk2A 562 57.25 3bomA 142 57.95 1wmuA 141 61.04 a.1.1.2 109416 1z2iA 358 65.27 1vfgA 390 65.81 a.173.1.1,d.218.1.4 108570,108571 2d5xB 146 68.37 a.1.1.2 131283 1uouA 474 68.46 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2g8yA 385 69.40 1r5rA 119 71.05 a.39.2.1 97104 2a14A 263 71.49 c.66.1.15 125972 1xrhA 351 71.60 c.122.1.1 115871 1zud2 66 71.77 2hbg 147 71.79 1irdB 146 74.46 a.1.1.2 66287 1i3dA 146 77.62 a.1.1.2 61587 2h8fA 143 78.70 a.1.1.2 136239 1v4xA 144 79.22 a.1.1.2 108363 1spgB 147 81.51 a.1.1.2 15588 2d5xA 141 82.05 a.1.1.2 131282 1qhfA 240 84.62 c.60.1.1 33960 1rfmA 344 85.58 c.122.1.1 97385 1v9nA 360 86.20 1a9wE 146 86.73 a.1.1.2 15551 2ev0A 142 86.92 a.4.5.24,a.76.1.1 132413,132414 1hdsB 145 87.71 a.1.1.2 15557