# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 2.22e-25 3b57A 209 6.21e-22 2pq7A 220 2.55e-15 2ogiA 196 0.000116 3ccgA 190 0.000149 2o08A 188 0.000959 2dqbA 376 0.001753 2hekA 371 0.002191 a.211.1.1 136354 1xx7A 184 0.003162 a.211.1.1 116143 2paqA 201 0.02844 a.211.1.1 139643 2q14A 410 0.05313 1ynbA 173 0.07126 a.211.1.1 123718 1u6zA 513 0.07903 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2parA 201 0.1010 1vqrA 297 0.2397 a.211.1.3 114015 1yoyA 175 0.2723 a.211.1.1 123795 2hd1A 326 0.3558 a.211.1.2 136338 2ousA 331 0.4153 2pgsA 451 0.4157 2ovyA 362 0.4622 2r8qA 359 0.5992 1rkpA 326 0.6122 a.211.1.2 97620 1y2kA 349 0.6443 a.211.1.2 122571 1tbbA 332 0.7188 a.211.1.2 106741 1tbfA 347 0.7367 a.211.1.2 106743 1zklA 353 1.431 1wxiA 275 2.391 c.26.2.1 121400 1f0jA 377 2.460 a.211.1.2 19346 1h6pA 203 2.972 a.146.1.1 60690 1tazA 365 3.670 a.211.1.2 106734 1miwA 404 4.019 a.173.1.1,d.218.1.4 79162,79163 3bg2A 444 6.203 1wpnA 188 6.439 c.107.1.1 114826 1vj7A 393 9.224 a.211.1.1,d.218.1.8 100801,100802 1z1lA 345 9.739 2j4jA 226 10.94 1pv0A 46 14.76 a.2.12.1 95141 1k7cA 233 15.06 c.23.10.4 68267 1khyA 148 15.34 a.174.1.1 77410 1aj9A 141 17.23 a.1.1.2 15332 1a3oA 141 22.17 a.1.1.2 15274 1nxuA 333 23.07 c.122.1.1 86389 1gcwB 135 24.48 a.1.1.2 15591 1spgA 144 28.44 a.1.1.2 15409 1a4fA 141 30.34 a.1.1.2 15394 2d68A 82 31.02 1vbiA 344 31.29 1i74A 309 31.88 c.107.1.1 61867 1wtjA 343 32.92 1dxtB 147 34.37 a.1.1.2 15450 3bomB 147 35.43 2ibnA 250 35.84 a.211.1.4 137195 1cg5A 141 36.72 a.1.1.2 15406 1r5rA 119 36.90 a.39.2.1 97104 1xrhA 351 37.29 c.122.1.1 115871 1ecmA 109 38.23 a.130.1.1 19492 1irdA 141 38.27 a.1.1.2 66286 1j7yA 141 39.10 a.1.1.2 66426 1gcvB 136 39.42 a.1.1.2 15589 1v4xB 146 40.04 a.1.1.2 108364 1v4xA 144 43.31 a.1.1.2 108363 3bomA 142 44.47 2gz4A 207 44.60 2oqcA 327 45.64 1j3eA 115 45.69 d.228.1.1 103834 2hbg 147 46.05 2d5xB 146 49.92 a.1.1.2 131283 2is9A 204 50.39 1z2iA 358 50.71 2h8fA 143 54.46 a.1.1.2 136239 1b1bA 140 55.69 a.4.5.24,a.76.1.1 16215,18421 1wmuA 141 56.10 a.1.1.2 109416 1irdB 146 57.85 a.1.1.2 66287 1rfmA 344 58.65 c.122.1.1 97385 2g8yA 385 62.01 1lybA 97 62.03 b.50.1.2 26857 1lrzA 426 63.92 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1on2A 142 63.93 a.4.5.24,a.76.1.1 87103,87104 1i3dA 146 70.81 a.1.1.2 61587 1v9nA 360 71.03 1vfgA 390 72.01 a.173.1.1,d.218.1.4 108570,108571 2d5xA 141 72.51 a.1.1.2 131282 1hdsA 141 73.78 a.1.1.2 15378 2ev0A 142 75.32 a.4.5.24,a.76.1.1 132413,132414 2a14A 263 75.90 c.66.1.15 125972 3bk2A 562 76.51 1hdsB 145 77.36 a.1.1.2 15557 1a9wE 146 80.43 a.1.1.2 15551 2jv2A 83 80.61 1uouA 474 82.85 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1babA 143 83.48 a.1.1.2 15235 1spgB 147 86.04 a.1.1.2 15588 2aa1A 144 87.64 a.1.1.2 126463