# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 1.27e-28 3b57A 209 1.57e-24 2pq7A 220 2.36e-16 2ogiA 196 0.000117 3ccgA 190 0.000118 2o08A 188 0.000254 1xx7A 184 0.001530 a.211.1.1 116143 2hekA 371 0.003172 a.211.1.1 136354 2dqbA 376 0.008273 2q14A 410 0.01302 2parA 201 0.03304 2paqA 201 0.05061 a.211.1.1 139643 1vqrA 297 0.1971 a.211.1.3 114015 1u6zA 513 0.2178 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1ynbA 173 0.3041 a.211.1.1 123718 1rkpA 326 0.3277 a.211.1.2 97620 1yoyA 175 0.3377 a.211.1.1 123795 1y2kA 349 0.3642 a.211.1.2 122571 1tbbA 332 0.5564 a.211.1.2 106741 1tbfA 347 0.8439 a.211.1.2 106743 1miwA 404 0.9288 a.173.1.1,d.218.1.4 79162,79163 2ovyA 362 1.134 2hd1A 326 1.525 a.211.1.2 136338 2r8qA 359 1.635 2ousA 331 2.143 1d3uB 201 2.536 a.74.1.2,a.74.1.2 18386,18387 1wxiA 275 3.169 c.26.2.1 121400 1zklA 353 3.437 1xrhA 351 3.699 c.122.1.1 115871 2pgsA 451 3.764 3bg2A 444 4.556 1nxuA 333 4.905 c.122.1.1 86389 1tazA 365 6.027 a.211.1.2 106734 1j3eA 115 8.454 d.228.1.1 103834 1v9nA 360 9.763 1wpnA 188 10.46 c.107.1.1 114826 2g8yA 385 12.80 1iw0A 215 16.76 a.132.1.1 83720 1vj7A 393 18.55 a.211.1.1,d.218.1.8 100801,100802 1rfmA 344 19.51 c.122.1.1 97385 1f0jA 377 22.35 a.211.1.2 19346 1aisB 200 23.04 a.74.1.2,a.74.1.2 18384,18385 1volA 204 24.00 a.74.1.2,a.74.1.2 18370,18371 2vc7A 314 24.69 1vfgA 390 25.66 a.173.1.1,d.218.1.4 108570,108571 1r5rA 119 26.97 a.39.2.1 97104 1wtjA 343 26.99 1z2iA 358 27.41 1dk8A 147 27.70 a.91.1.1 18548 1lrrA 131 28.38 d.228.1.1 78165 1vbiA 344 29.57 1dlwA 116 29.64 a.1.1.1 14982 2ibnA 250 31.48 a.211.1.4 137195 1idrA 136 33.66 a.1.1.1 62301 2qptA 550 37.29 1lrzA 426 38.87 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1khyA 148 38.98 a.174.1.1 77410 1zud2 66 40.47 1z1lA 345 40.62 1zp2A 235 41.88 2ev0A 142 43.33 a.4.5.24,a.76.1.1 132413,132414 2a6aA 218 43.83 c.55.1.9,c.55.1.9 126231,126232 1xfrA 128 44.81 2ejxA 139 45.14 2nu8B 388 47.08 2ia7A 134 49.71 1pv0A 46 51.79 a.2.12.1 95141 1qtwA 285 53.23 c.1.15.1 29392 1ztcA 221 53.82 d.157.1.11 125635 1f5tA 121 59.39 a.4.5.24,a.76.1.1 16203,18409 2iskA 230 60.15 2gk3A 256 60.40 1a3oA 141 60.59 a.1.1.2 15274 1aj9A 141 60.93 a.1.1.2 15332 1on2A 142 61.18 a.4.5.24,a.76.1.1 87103,87104 2freA 200 61.64 d.90.1.1 133985 1c9bA 207 62.25 a.74.1.2,a.74.1.2 18372,18373 1jpnA 296 62.29 a.24.13.1,c.37.1.10 67039,67040 1qjtA 99 64.35 a.39.1.6 17335 2dc4A 165 69.09 2cviA 83 69.64 1xw5A 217 70.62 a.45.1.1,c.47.1.5 116099,116100 2gkmA 136 72.72 3bomA 142 72.94 1d0yA 761 75.81 b.34.3.1,c.37.1.9 24581,32178 1nrwA 288 76.12 c.108.1.10 86128 2hnhA 910 77.39 1k7cA 233 78.55 c.23.10.4 68267 1eudB 396 78.76 c.23.4.1,d.142.1.4 31150,41571 1wzdA 215 79.35 a.132.1.1 121493 1n45A 233 83.73 a.132.1.1 79981 1hdsA 141 84.56 a.1.1.2 15378