# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 4.61e-28 3b57A 209 4.88e-24 2pq7A 220 1.40e-16 3ccgA 190 3.61e-05 2ogiA 196 4.89e-05 1xx7A 184 0.000711 a.211.1.1 116143 2dqbA 376 0.000736 2o08A 188 0.000769 2hekA 371 0.001137 a.211.1.1 136354 2paqA 201 0.005680 a.211.1.1 139643 2parA 201 0.01132 2q14A 410 0.03399 1u6zA 513 0.03927 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1vqrA 297 0.08620 a.211.1.3 114015 1ynbA 173 0.1790 a.211.1.1 123718 1yoyA 175 0.3022 a.211.1.1 123795 2pgsA 451 0.3326 2r8qA 359 0.6303 2ovyA 362 0.9857 2hd1A 326 1.138 a.211.1.2 136338 1y2kA 349 1.264 a.211.1.2 122571 1tbbA 332 1.345 a.211.1.2 106741 1wxiA 275 1.621 c.26.2.1 121400 1rkpA 326 1.773 a.211.1.2 97620 2ousA 331 2.107 3bg2A 444 3.072 1h6pA 203 3.950 a.146.1.1 60690 1miwA 404 4.017 a.173.1.1,d.218.1.4 79162,79163 1zklA 353 4.102 2j4jA 226 4.399 1wpnA 188 4.886 c.107.1.1 114826 1tbfA 347 5.724 a.211.1.2 106743 1f0jA 377 6.207 a.211.1.2 19346 1k7cA 233 9.720 c.23.10.4 68267 1khyA 148 9.807 a.174.1.1 77410 1pv0A 46 10.65 a.2.12.1 95141 1vj7A 393 12.44 a.211.1.1,d.218.1.8 100801,100802 1tazA 365 14.90 a.211.1.2 106734 2ibnA 250 15.92 a.211.1.4 137195 1j3eA 115 20.13 d.228.1.1 103834 1aj9A 141 22.15 a.1.1.2 15332 1lrzA 426 22.91 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2d68A 82 24.50 1wtjA 343 24.90 1gcwB 135 24.95 a.1.1.2 15591 1ecmA 109 26.72 a.130.1.1 19492 1d3uB 201 26.91 a.74.1.2,a.74.1.2 18386,18387 1a3oA 141 27.02 a.1.1.2 15274 1r5rA 119 27.61 a.39.2.1 97104 1b1bA 140 28.20 a.4.5.24,a.76.1.1 16215,18421 1nxuA 333 29.95 c.122.1.1 86389 1lybA 97 31.15 b.50.1.2 26857 2oqcA 327 31.47 2gz4A 207 32.44 1lrrA 131 36.81 d.228.1.1 78165 1i74A 309 40.61 c.107.1.1 61867 3cz6A 168 42.81 1on2A 142 43.05 a.4.5.24,a.76.1.1 87103,87104 1xrhA 351 45.55 c.122.1.1 115871 1g3jA 532 45.98 a.118.1.1 19114 1spgA 144 46.81 a.1.1.2 15409 1vbiA 344 46.91 1bg6 359 48.75 3bomB 147 51.22 1qhfA 240 52.87 c.60.1.1 33960 1vfgA 390 53.62 a.173.1.1,d.218.1.4 108570,108571 1xszA 356 53.77 a.118.3.1,d.129.9.1 116005,116006 1rfmA 344 53.85 c.122.1.1 97385 1a4fA 141 55.59 a.1.1.2 15394 1j7yA 141 57.32 a.1.1.2 66426 1fx7A 230 58.21 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2is9A 204 58.28 2v6vA 156 58.96 1volA 204 62.84 a.74.1.2,a.74.1.2 18370,18371 1gcvB 136 63.19 a.1.1.2 15589 1f5tA 121 65.70 a.4.5.24,a.76.1.1 16203,18409 2hnhA 910 67.38 1wmuA 141 69.22 a.1.1.2 109416 2h8fA 143 71.11 a.1.1.2 136239 1vhxA 150 71.57 c.55.3.8 100712 2g8yA 385 74.13 2db0A 253 75.05 2f6lA 166 78.16 a.130.1.4 133049 1irdA 141 78.50 a.1.1.2 66286 1idrA 136 79.56 a.1.1.1 62301 2nu8B 388 82.52 1zud2 66 83.32 2cviA 83 84.36 1cukA 203 87.56 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265