# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 1.76e-32 3b57A 209 5.44e-27 2pq7A 220 1.93e-18 2ogiA 196 4.71e-05 3ccgA 190 6.30e-05 2paqA 201 0.000621 a.211.1.1 139643 2dqbA 376 0.000897 2o08A 188 0.001143 2hekA 371 0.001296 a.211.1.1 136354 1xx7A 184 0.001297 a.211.1.1 116143 2q14A 410 0.002135 2parA 201 0.04039 1u6zA 513 0.06018 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1ynbA 173 0.1418 a.211.1.1 123718 2ousA 331 0.3000 1yoyA 175 0.5251 a.211.1.1 123795 2ovyA 362 1.000 1tbbA 332 1.016 a.211.1.2 106741 2pgsA 451 1.168 1vqrA 297 1.175 a.211.1.3 114015 2hd1A 326 1.208 a.211.1.2 136338 1y2kA 349 1.289 a.211.1.2 122571 1rkpA 326 1.531 a.211.1.2 97620 1f0jA 377 1.918 a.211.1.2 19346 1tbfA 347 2.344 a.211.1.2 106743 1wxiA 275 2.821 c.26.2.1 121400 2r8qA 359 2.836 1h6pA 203 3.835 a.146.1.1 60690 1zklA 353 4.264 1pcl 355 4.424 1amuA 563 4.637 e.23.1.1 43351 1xm9A 457 5.975 a.118.1.24 122142 2dkb 433 11.88 2j4jA 226 12.59 2o0uA 364 15.65 d.144.1.7 138868 2bylA 439 18.12 c.67.1.4 129490 2g7zA 282 19.44 2byjA 439 19.52 c.67.1.4 129483 1volA 204 19.60 a.74.1.2,a.74.1.2 18370,18371 2ha9A 446 20.21 2r3iA 298 21.02 2vn4A 599 21.68 1pv0A 46 22.15 a.2.12.1 95141 1b1bA 140 22.44 a.4.5.24,a.76.1.1 16215,18421 1d6jA 211 24.85 c.37.1.4 31940 1bg6 359 27.70 1bouB 302 28.94 c.56.6.1 33859 2r98A 456 29.03 3bg2A 444 30.41 2c40A 312 31.50 1kblA 873 31.74 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1miqA 375 32.69 b.50.1.2 79151 2guyA 478 32.74 b.71.1.1,c.1.8.1 135754,135755 2is9A 204 33.13 3c9uA 342 34.51 1g3jA 532 34.66 a.118.1.1 19114 2javA 279 34.80 d.144.1.7 138243 1vzyA 291 34.94 d.193.1.1,g.81.1.1 114042,114043 3bomB 147 35.93 1khyA 148 38.70 a.174.1.1 77410 3bk2A 562 39.80 1irdB 146 39.92 a.1.1.2 66287 2gz4A 207 40.35 2nooA 502 40.39 2e9xC 219 40.66 1z2iA 358 40.70 1gwcA 230 41.33 a.45.1.1,c.47.1.5 70660,70661 2j1pA 293 41.51 1vefA 395 41.71 c.67.1.4 120018 1hr6A 475 41.77 d.185.1.1,d.185.1.1 61164,61165 1r5rA 119 41.94 a.39.2.1 97104 1f4qA 165 42.09 a.39.1.8 17360 2v6vA 156 42.39 2ibnA 250 42.71 a.211.1.4 137195 1qgjA 300 43.12 a.93.1.1 18691 1qhfA 240 43.19 c.60.1.1 33960 1ecmA 109 44.65 a.130.1.1 19492 1v4xB 146 45.56 a.1.1.2 108364 1b4vA 504 45.87 c.3.1.2,d.16.1.1 30334,37865 1wx0A 223 46.99 c.1.10.1 121382 1o66A 275 47.22 c.1.12.8 92547 2qedA 258 48.22 1zrzA 364 48.55 1lokA 291 48.66 c.56.5.4 78122 2z07A 420 48.82 1phkA 298 49.56 d.144.1.7 41635 2iutA 574 50.46 1aj9A 141 51.07 a.1.1.2 15332 1gw1A 376 52.49 c.1.8.3 76361 1w7jA 795 53.97 b.34.3.1,c.37.1.9 120688,120689 1oatA 439 54.09 c.67.1.4 34461 2pdrA 149 55.98 1pioA 257 56.30 e.3.1.1 42719 1z1lA 345 56.54 1j3eA 115 56.56 d.228.1.1 103834 1ejrC 567 57.33 b.92.1.1,c.1.9.2 28420,29042 2azqA 311 58.25 1twdA 256 58.28 c.1.30.1 107397 1l6wA 220 58.98 c.1.10.1 73632 2pb2A 420 59.47 1gcwB 135 60.24 a.1.1.2 15591 1a3oA 141 61.72 a.1.1.2 15274 1qv9A 283 61.74 c.127.1.1 96356 1d3uB 201 61.98 a.74.1.2,a.74.1.2 18386,18387 1ldjA 760 62.55 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 2qm1A 326 62.86 1v9nA 360 63.50 1ve3A 227 63.98 c.66.1.43 120010 1f5tA 121 64.49 a.4.5.24,a.76.1.1 16203,18409 2jc9A 555 64.92 1ez4A 318 66.29 c.2.1.5,d.162.1.1 64917,64918 1n5dA 288 66.67 c.2.1.2 80030 1xv5A 401 67.39 2hbg 147 67.52 2g8yA 385 68.15 2pmbA 462 69.30 1on2A 142 69.90 a.4.5.24,a.76.1.1 87103,87104 2h8fB 146 70.57 a.1.1.2 136240 1tg6A 277 71.26 c.14.1.1 119236 2d1pA 140 71.54 c.114.1.1 131136 1tf4A 605 73.56 a.102.1.2,b.2.2.2 18827,22393 1d0yA 761 74.07 b.34.3.1,c.37.1.9 24581,32178 3c6gA 479 76.43 1o26A 232 76.59 d.207.1.1 86566 2gx5A 170 78.44 1tvoA 368 78.46 1s9jA 341 80.04 d.144.1.7 112049 1q1cA 280 80.25 d.26.1.1,d.26.1.1 104474,104475 1crkA 380 81.27 a.83.1.1,d.128.1.2 18458,41193 1o17A 345 82.31 a.46.2.1,c.27.1.1 80765,80766 1cshA 435 82.31 a.103.1.1 18880 1t13A 158 82.96 1schA 294 84.64 a.93.1.1 18685 2j3xA 431 85.51 1qdeA 224 85.86 c.37.1.19 32410 1ojjA 402 88.81 b.29.1.10 93130 1kutA 230 89.00 d.143.1.1 73017 2c0hA 353 89.10 c.1.8.3 129594 2avrX 119 89.95