# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 1.70e-27 3b57A 209 1.52e-23 2pq7A 220 3.14e-16 3ccgA 190 6.12e-05 2ogiA 196 7.60e-05 2dqbA 376 0.000928 1xx7A 184 0.001379 a.211.1.1 116143 2hekA 371 0.001570 a.211.1.1 136354 2o08A 188 0.001825 2paqA 201 0.01265 a.211.1.1 139643 2parA 201 0.03093 2q14A 410 0.03438 1u6zA 513 0.09902 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1vqrA 297 0.1151 a.211.1.3 114015 1ynbA 173 0.1205 a.211.1.1 123718 2pgsA 451 0.4619 1yoyA 175 0.4872 a.211.1.1 123795 2ovyA 362 1.106 2r8qA 359 1.120 2hd1A 326 1.412 a.211.1.2 136338 1rkpA 326 1.981 a.211.1.2 97620 1tbbA 332 2.199 a.211.1.2 106741 1y2kA 349 2.205 a.211.1.2 122571 1wxiA 275 2.302 c.26.2.1 121400 2ousA 331 2.683 1tbfA 347 4.477 a.211.1.2 106743 1miwA 404 4.953 a.173.1.1,d.218.1.4 79162,79163 3bg2A 444 5.756 1zklA 353 5.917 1h6pA 203 6.094 a.146.1.1 60690 1wpnA 188 7.680 c.107.1.1 114826 2j4jA 226 7.747 1k7cA 233 11.58 c.23.10.4 68267 1vj7A 393 11.68 a.211.1.1,d.218.1.8 100801,100802 1f0jA 377 11.96 a.211.1.2 19346 1pv0A 46 13.64 a.2.12.1 95141 1khyA 148 13.68 a.174.1.1 77410 1tazA 365 18.75 a.211.1.2 106734 1aj9A 141 19.35 a.1.1.2 15332 2ibnA 250 21.45 a.211.1.4 137195 1lrzA 426 22.25 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1gcwB 135 24.35 a.1.1.2 15591 1a3oA 141 25.25 a.1.1.2 15274 2oqcA 327 26.78 2d68A 82 27.61 1nxuA 333 32.02 c.122.1.1 86389 1wtjA 343 32.20 1j3eA 115 32.28 d.228.1.1 103834 1r5rA 119 35.32 a.39.2.1 97104 1zud2 66 36.61 1b1bA 140 39.49 a.4.5.24,a.76.1.1 16215,18421 1d3uB 201 40.04 a.74.1.2,a.74.1.2 18386,18387 1ecmA 109 41.08 a.130.1.1 19492 1spgA 144 43.61 a.1.1.2 15409 1g3jA 532 44.17 a.118.1.1 19114 3bomB 147 45.13 1xrhA 351 47.03 c.122.1.1 115871 1vbiA 344 48.57 1o5hA 214 52.19 a.191.1.1 92497 1xszA 356 53.03 a.118.3.1,d.129.9.1 116005,116006 1d6jA 211 54.34 c.37.1.4 31940 1i74A 309 55.26 c.107.1.1 61867 1j7yA 141 55.54 a.1.1.2 66426 2gz4A 207 55.99 1a4fA 141 56.87 a.1.1.2 15394 2h8fA 143 57.52 a.1.1.2 136239 2pb2A 420 58.99 1on2A 142 59.47 a.4.5.24,a.76.1.1 87103,87104 2is9A 204 59.50 1lrrA 131 61.65 d.228.1.1 78165 1rfmA 344 61.88 c.122.1.1 97385 1v4xB 146 62.31 a.1.1.2 108364 1qhfA 240 63.92 c.60.1.1 33960 3cz6A 168 64.27 1irdA 141 66.87 a.1.1.2 66286 1gcvB 136 67.02 a.1.1.2 15589 2byjA 439 67.03 c.67.1.4 129483 1wmuA 141 69.29 a.1.1.2 109416 2bylA 439 69.69 c.67.1.4 129490 3bomA 142 76.43 1vfgA 390 76.66 a.173.1.1,d.218.1.4 108570,108571 2g8yA 385 77.51 1v4xA 144 77.67 a.1.1.2 108363 1dxtB 147 81.51 a.1.1.2 15450 1a9wE 146 82.00 a.1.1.2 15551 2hf0A 316 83.35 2aotA 292 83.35 c.66.1.19 127098 2v6vA 156 84.18 1jj2Q 154 85.80 d.55.1.1 63102 1f5tA 121 87.27 a.4.5.24,a.76.1.1 16203,18409