# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qgsA	225	4.59e-29		
3b57A	209	3.09e-25		
2pq7A	220	2.01e-16		
2ogiA	196	9.80e-05		
3ccgA	190	0.000217		
2dqbA	376	0.000959		
1xx7A	184	0.001663	a.211.1.1	116143
2hekA	371	0.001768	a.211.1.1	136354
2o08A	188	0.005408		
2paqA	201	0.01354	a.211.1.1	139643
2q14A	410	0.02753		
1ynbA	173	0.05470	a.211.1.1	123718
1u6zA	513	0.1045	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
2parA	201	0.1540		
1vqrA	297	0.3643	a.211.1.3	114015
2pgsA	451	0.5778		
1yoyA	175	0.5892	a.211.1.1	123795
2ovyA	362	1.616		
2r8qA	359	1.631		
2ousA	331	3.229		
1y2kA	349	3.410	a.211.1.2	122571
1wxiA	275	4.054	c.26.2.1	121400
1tbbA	332	4.341	a.211.1.2	106741
2hd1A	326	5.833	a.211.1.2	136338
1miwA	404	6.364	a.173.1.1,d.218.1.4	79162,79163
1rkpA	326	7.496	a.211.1.2	97620
3bg2A	444	9.450		
1h6pA	203	10.16	a.146.1.1	60690
1k7cA	233	11.35	c.23.10.4	68267
1zklA	353	14.36		
1tbfA	347	19.76	a.211.1.2	106743
1f0jA	377	21.31	a.211.1.2	19346
1aj9A	141	21.55	a.1.1.2	15332
1wpnA	188	23.61	c.107.1.1	114826
1vj7A	393	25.32	a.211.1.1,d.218.1.8	100801,100802
1tazA	365	28.01	a.211.1.2	106734
2j4jA	226	29.04		
1ecmA	109	29.17	a.130.1.1	19492
1lybA	97	29.98	b.50.1.2	26857
1nxuA	333	30.06	c.122.1.1	86389
1a3oA	141	30.41	a.1.1.2	15274
1vbiA	344	30.70		
1gcwB	135	31.63	a.1.1.2	15591
1lrzA	426	32.18	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1wtjA	343	34.93		
1xrhA	351	35.54	c.122.1.1	115871
2ibnA	250	36.74	a.211.1.4	137195
1spgA	144	38.96	a.1.1.2	15409
1pv0A	46	39.05	a.2.12.1	95141
1z2iA	358	40.35		
2gz4A	207	40.76		
1rfmA	344	42.82	c.122.1.1	97385
2dkb	433	42.82		
2oqcA	327	48.00		
1glqA	209	48.74	a.45.1.1,c.47.1.5	17588,32882
2byjA	439	50.02	c.67.1.4	129483
2bylA	439	51.03	c.67.1.4	129490
1v4xA	144	52.53	a.1.1.2	108363
1a4fA	141	54.02	a.1.1.2	15394
2pb2A	420	54.84		
1khyA	148	55.66	a.174.1.1	77410
1vfgA	390	56.70	a.173.1.1,d.218.1.4	108570,108571
1irdA	141	57.92	a.1.1.2	66286
1b1bA	140	59.13	a.4.5.24,a.76.1.1	16215,18421
3bomA	142	64.36		
2d68A	82	65.42		
1xjdA	345	67.99	d.144.1.7	115388
1j3eA	115	69.41	d.228.1.1	103834
1j7yA	141	69.92	a.1.1.2	66426
2g8yA	385	70.03		
2is9A	204	70.87		
1gcvB	136	71.88	a.1.1.2	15589
2r98A	456	74.73		
2cviA	83	76.05		
2ia7A	134	78.83		
1v4xB	146	81.78	a.1.1.2	108364
1zud2	66	82.04		
1v9nA	360	83.18		
1o5hA	214	84.51	a.191.1.1	92497
2hbg	147	85.74		
3bk2A	562	86.45