# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 2.25e-15 3b57A 209 1.08e-12 2pq7A 220 1.33e-07 2o08A 188 0.02107 3ccgA 190 0.06422 2ogiA 196 0.1055 2dqbA 376 0.1952 2hekA 371 0.3830 a.211.1.1 136354 1vj7A 393 0.3909 a.211.1.1,d.218.1.8 100801,100802 1xx7A 184 0.4815 a.211.1.1 116143 1rkpA 326 0.7420 a.211.1.2 97620 2ovyA 362 1.166 2paqA 201 1.230 a.211.1.1 139643 2parA 201 1.757 2q14A 410 1.855 1zklA 353 1.933 2hd1A 326 2.545 a.211.1.2 136338 1tbfA 347 3.797 a.211.1.2 106743 1tbbA 332 7.514 a.211.1.2 106741 1tazA 365 9.407 a.211.1.2 106734 1u6zA 513 9.889 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2r8qA 359 10.38 1rqjA 299 11.38 a.128.1.1 97744 1volA 204 11.70 a.74.1.2,a.74.1.2 18370,18371 1yoyA 175 12.48 a.211.1.1 123795 1y2kA 349 12.83 a.211.1.2 122571 1w98B 283 19.01 2ousA 331 19.82 1c9bA 207 19.84 a.74.1.2,a.74.1.2 18372,18373 2e1dA 331 21.26 2jejA 358 21.58 d.240.1.1,e.8.1.7 138284,138285 1n81A 186 22.30 a.185.1.1 85388 2hnhA 910 22.66 1jmoA 480 22.81 e.1.1.1 77138 1dgkN 917 22.91 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 1ynbA 173 23.76 a.211.1.1 123718 1vqrA 297 24.27 a.211.1.3 114015 1bw9A 356 24.37 c.2.1.7,c.58.1.1 30274,33922 1c1dA 355 30.74 c.2.1.7,c.58.1.1 30270,33918 1jgsA 138 31.10 a.4.5.28 66683 2qg3A 208 31.49 1tyfA 193 32.41 c.14.1.1 30885 1dwkA 156 32.47 a.35.1.4,d.72.1.1 17075,39606 2ct8A 497 33.42 1z1lA 345 38.78 2ivxA 257 40.54 1gs5A 258 42.65 c.73.1.2 70395 1ibrB 462 44.59 a.118.1.1 19120 1zd8A 227 45.74 1qhaA 917 46.25 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 1u7kA 131 48.03 a.73.1.1 113087 1miwA 404 48.49 a.173.1.1,d.218.1.4 79162,79163 3ci0K 298 49.02 2es9A 115 49.42 a.247.1.1 132318 1d3uB 201 49.74 a.74.1.2,a.74.1.2 18386,18387 1yirA 408 53.63 c.1.17.2,d.41.2.2 123330,123331 1jx4A 352 53.94 d.240.1.1,e.8.1.7 90378,90379 2bs3C 256 56.23 1oc0A 379 56.43 e.1.1.1 86790 1hkbA 917 56.85 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1dlyA 164 56.85 a.1.1.1 14983 1onrA 316 58.67 c.1.10.1 29169 3bg2A 444 58.84 2nnnA 140 58.97 2hnkA 239 59.52 2r31A 239 59.75 1aisB 200 59.76 a.74.1.2,a.74.1.2 18384,18385 2zcoA 293 62.35 3bqyA 209 62.91 2pgsA 451 65.02 1bouA 139 66.15 a.88.1.1 18521 1ex1A 605 66.34 c.1.8.7,c.23.11.1 29013,31347 1b3uA 588 66.66 a.118.1.2 19135 2cbyA 208 66.76 c.14.1.1 130202 1r1hA 696 68.14 d.92.1.4 104756 2zl4A 196 70.03 1l5aA 436 70.88 c.43.1.2,c.43.1.2 75923,75924 1bif 469 71.08 2basA 431 71.93 c.1.33.1,d.110.6.2 128244,128245 1jkvA 266 73.60 a.25.1.3 71719 1mzgA 146 74.48 d.224.1.1 79696 2h0uA 217 75.21 1czaN 917 75.46 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1mumA 295 75.81 c.1.12.7 85108 1dvoA 152 76.42 a.136.1.1 19623 1idrA 136 77.84 a.1.1.1 62301 2tct 207 77.84 1dmtA 696 78.05 d.92.1.4 40296 2pyqA 114 78.07 1iirA 415 80.08 c.87.1.5 62453 1fmjA 351 81.62 c.37.1.5 59879 1dl5A 317 81.71 c.66.1.7,d.197.1.1 64720,64721 2jgzB 260 82.29 1tljA 213 82.54 d.282.1.1 107126 1t7pA 698 83.15 c.55.3.5,e.8.1.1 33712,43005 3bpvA 138 83.21 1so2A 420 84.47 a.211.1.2 98936 1kidA 203 84.89 c.8.5.1 30771 1lfpA 249 86.78 e.39.1.1 73885 1x38A 602 88.60 c.1.8.7,c.23.11.1 121655,121656 2db0A 253 88.84