# List of top-scoring protein chains for T0470.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pjqA 231 2.05e-23 2pq7A 220 1.54e-21 2qgsA 225 1.98e-21 3b57A 209 5.87e-21 2o6iA 480 1.87e-15 a.211.1.1 138920 2hekA 371 2.42e-14 a.211.1.1 136354 2o08A 188 7.78e-14 3ccgA 190 1.14e-12 2dqbA 376 2.18e-12 2ogiA 196 1.61e-11 2q14A 410 2.49e-11 1xx7A 184 5.91e-07 a.211.1.1 116143 1z1lA 345 2.73e-05 2hd1A 326 5.23e-05 a.211.1.2 136338 2yy2A 333 5.32e-05 2chmA 326 0.000255 a.211.1.2 130472 3bg2A 444 0.000257 1xozA 364 0.000293 a.211.1.2 115719 1tbfA 347 0.000426 a.211.1.2 106743 2pgsA 451 0.000939 1t9rA 366 0.001668 a.211.1.2 106725 1udtA 324 0.002127 a.211.1.2 99221 2h44A 326 0.002160 a.211.1.2 136069 3b2rA 330 0.002222 1rkpA 326 0.002493 a.211.1.2 97620 2cqzA 177 0.002984 2paqA 201 0.003618 a.211.1.1 139643 2ovyA 362 0.005090 2oupA 331 0.006529 2ousA 331 0.008449 2parA 201 0.009824 1yoyA 175 0.01041 a.211.1.1 123795 2r8qA 359 0.01714 2huoA 289 0.02436 a.211.1.4 136778 2ibnA 250 0.03610 a.211.1.4 137195 1zklA 353 0.03970 2ouvA 331 0.04403 2qylA 337 0.04544 1rorA 378 0.05587 a.211.1.2 111901 1f0jA 377 0.05588 a.211.1.2 19346 1ynbA 173 0.05603 a.211.1.1 123718 2qykA 335 0.05799 1xm6A 398 0.05945 a.211.1.2 115471 1tb5A 381 0.05954 a.211.1.2 106735 1tazA 365 0.1095 a.211.1.2 106734 2fm0A 361 0.1622 a.211.1.2 133752 1oynA 360 0.1636 a.211.1.2 87609 2qynA 328 0.1646 1tbbA 332 0.1650 a.211.1.2 106741 1y2kA 349 0.1660 a.211.1.2 122571 1zknA 334 0.1691 a.211.1.2 125201 1mkdA 328 0.2078 a.211.1.2 84982 2qymA 358 0.4493 1rfmA 344 1.149 c.122.1.1 97385 2pw3A 327 1.454 1vj7A 393 3.629 a.211.1.1,d.218.1.8 100801,100802 2p4sA 373 3.780 1gt6A 269 4.744 c.69.1.17 76342 1w36D 608 4.961 c.37.1.19,c.37.1.19 114128,114129 2uz3A 243 5.346 c.37.1.24,g.39.1.14 140040,140041 1u6zA 513 5.493 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2b8tA 223 5.989 c.37.1.24,g.39.1.14 128109,128110 2floA 524 6.144 a.211.1.5,c.55.1.8,c.55.1.8 133733,133734,133735 1tibA 269 6.536 c.69.1.17 34738 1qjpA 171 11.93 f.4.1.1 43742 1bxwA 172 12.19 f.4.1.1 43743 1ra0A 430 13.15 b.92.1.2,c.1.9.5 111756,111757 1k6wA 426 13.17 b.92.1.2,c.1.9.5 68236,68237 1r9zA 430 14.17 b.92.1.2,c.1.9.5 111754,111755 2ov8A 288 14.38 1ra5A 430 14.85 b.92.1.2,c.1.9.5 111759,111760 2fnoA 248 14.97 a.45.1.1,c.47.1.5 133821,133822 2rkxA 255 20.28 1bunA 120 21.23 a.133.1.2 19614 1l0oC 243 22.13 a.4.13.2 73405 2gz4A 207 24.79 1m38A 287 26.50 b.40.5.1 78531 1yppA 286 26.64 b.40.5.1 25407 1pt2A 447 29.02 b.67.2.2 95086 1hujA 281 29.06 b.40.5.1 25403 1svvA 359 29.63 c.67.1.1 106054 1hukA 281 30.03 b.40.5.1 25405 1oygA 447 30.60 b.67.2.2 93726 1hlbA 158 30.91 a.1.1.2 15625 8prkA 287 31.40 b.40.5.1 25395 1e9gA 286 31.60 b.40.5.1 59393 2ik9A 286 31.63 2ik1A 286 34.50 2ik0A 286 34.64 3byjA 473 35.96 2qaiA 111 37.28 2qedA 258 37.72 2ovrA 149 37.88 a.157.1.1,d.42.1.1 139386,139387 3bylA 473 38.06 1so2A 420 40.48 a.211.1.2 98936 3bykA 473 41.02 1g90A 176 41.33 f.4.1.1 60388 2ge4A 177 42.26 f.4.1.1 135048 1m6kA 251 43.35 e.3.1.1 78695 2c75A 520 44.83 c.3.1.2,d.16.1.5 130026,130027 1uwyA 426 46.48 b.3.2.1,c.56.5.1 100130,100131 1s3eA 520 47.27 c.3.1.2,d.16.1.5 98426,98427 2bk5A 520 47.35 c.3.1.2,d.16.1.5 128656,128657 1ulsA 245 47.85 c.2.1.2 113284 2c76A 520 48.08 c.3.1.2,d.16.1.5 130030,130031 2c73A 520 49.98 c.3.1.2,d.16.1.5 130022,130023 2p0iA 456 51.95 2dzdA 461 52.35 2c72A 520 56.28 c.3.1.2,d.16.1.5 130018,130019 2ebdA 309 59.68 3bemA 218 59.68 3sc2A 259 61.74 c.69.1.5 34648 1qfxA 460 63.56 c.60.1.2 33994 2bqxA 173 63.86 1whtA 256 65.09 c.69.1.5 34646 1bcsA 263 65.51 c.69.1.5 34647 1gpjA 404 66.82 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1whsA 255 68.96 c.69.1.5 34649 1e4yA 214 70.95 c.37.1.1,g.41.2.1 31901,45181 1e4vA 214 72.18 c.37.1.1,g.41.2.1 31903,45183 1nj8A 459 73.72 c.51.1.1,d.68.5.1,d.104.1.1 85769,85770,85771 1kjnA 157 74.23 c.115.1.1 72614 1nuoA 261 76.67 a.123.1.1 86198 1wg8A 285 77.49 a.60.13.1,c.66.1.23 114605,114606 2r2dA 276 78.01 1sg9A 282 79.57 c.66.1.30 105526 1nv8A 284 80.96 c.66.1.30 86224 1akeA 214 80.98 c.37.1.1,g.41.2.1 31905,45185 1kskA 234 81.64 d.66.1.5,d.265.1.3 72920,90389 2h34A 309 82.77 2es9A 115 84.81 a.247.1.1 132318 2it2A 200 86.34 1vq1A 294 86.43 c.66.1.30 120067 2oegA 505 87.42 2qytA 317 88.01 2ik6A 286 88.59