# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 8.76e-28 3b57A 209 2.75e-21 2pq7A 220 1.21e-19 2o08A 188 2.66e-19 3ccgA 190 1.03e-18 2ogiA 196 1.74e-17 2hekA 371 6.69e-15 a.211.1.1 136354 2q14A 410 1.72e-13 1vqrA 297 2.21e-13 a.211.1.3 114015 2dqbA 376 5.47e-12 2pgsA 451 6.18e-10 2paqA 201 1.28e-08 a.211.1.1 139643 2parA 201 7.05e-08 3bg2A 444 1.71e-07 1xx7A 184 2.59e-06 a.211.1.1 116143 2hd1A 326 9.70e-06 a.211.1.2 136338 1ynbA 173 9.97e-06 a.211.1.1 123718 1zklA 353 1.15e-05 2ovyA 362 1.71e-05 2r8qA 359 1.86e-05 1tazA 365 2.40e-05 a.211.1.2 106734 2ousA 331 2.65e-05 1tbfA 347 4.13e-05 a.211.1.2 106743 1y2kA 349 5.71e-05 a.211.1.2 122571 1z1lA 345 9.25e-05 1u6zA 513 0.000440 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2gz4A 207 0.000690 2ibnA 250 0.002887 a.211.1.4 137195 1so2A 420 0.005793 a.211.1.2 98936 1vj7A 393 0.02964 a.211.1.1,d.218.1.8 100801,100802 1vfgA 390 0.06891 a.173.1.1,d.218.1.4 108570,108571 3cumA 302 2.628 2itbA 206 3.013 2ifuA 307 3.611 1yb4A 295 3.976 1dqeA 137 4.780 a.39.2.1 17388 1vpdA 299 5.109 a.100.1.1,c.2.1.6 113951,113952 1xfrA 128 5.645 1mzjA 339 6.628 c.95.1.2,c.95.1.2 79700,79701 2z5kA 890 7.064 2h78A 302 7.574 2cyaA 364 8.340 1szqA 483 9.570 e.44.1.1 99045 2de3A 365 10.46 1bg6 359 10.50 1mwvA 714 11.11 a.93.1.3,a.93.1.3 85161,85162 2cfmA 561 15.71 1gbs 185 16.11 3bq3A 270 18.78 1le6A 123 19.32 a.133.1.2 73862 3cqyA 370 19.63 1j7jA 178 20.01 c.61.1.1 84131 2pgd 482 20.02 1rr7A 129 21.83 a.4.1.14 105075 1qgiA 259 22.57 d.2.1.7 37001 1s2wA 295 22.70 c.1.12.7 98407 2hivA 621 24.33 1a76 326 24.47 1eluA 390 24.62 c.67.1.3 34434 1zp4A 304 24.79 1ohvA 472 25.29 c.67.1.4 93031 2j7tA 302 25.50 2j5bA 348 25.51 1pa2A 306 25.85 a.93.1.1 18693 1s3jA 155 27.64 a.4.5.28 98437 1d2mA 665 27.83 c.37.1.19,c.37.1.19 32417,32418 1topA 162 28.11 a.39.1.5 17223 2qq9A 226 28.64 1qazA 351 28.79 a.102.3.1 18848 3bj6A 152 28.96 1vg0A 650 29.68 c.3.1.3,d.16.1.6 108596,108597 1n28A 124 30.69 a.133.1.2 91550 2hp0A 466 31.16 2ekcA 262 31.31 1yi8A 351 31.87 2h3bA 494 32.58 1ki9A 192 32.76 c.37.1.1 84404 2z06A 252 33.01 1qgrA 876 33.82 a.118.1.1 19119 1i19A 561 35.89 d.58.32.3,d.145.1.1 61522,61523 2fstX 367 36.92 1t7rA 269 37.02 a.123.1.1 106635 1abbA 828 37.07 c.87.1.4 35536 1khyA 148 37.36 a.174.1.1 77410 1wsuA 124 38.19 a.4.5.35,a.4.5.35 121245,121246 1u6eA 335 39.18 c.95.1.2,c.95.1.2 119568,119569 2vglA 621 43.25 2po3A 424 44.36 2ie4A 589 44.95 a.118.1.2 137291 2eb0A 307 45.18 1ovlA 271 46.06 a.123.1.1 87455 2p3eA 420 47.58 1miwA 404 47.66 a.173.1.1,d.218.1.4 79162,79163 2e67A 264 48.21 2g8yA 385 49.10 1woyA 500 49.16 a.27.1.1,c.26.1.1 121130,121131 1zowA 313 49.49 2j16A 182 49.70 1o6zA 303 49.83 c.2.1.5,d.162.1.1 81107,81108 1vfsA 386 50.87 b.49.2.2,c.1.6.1 108584,108585 2cy8A 453 51.50 1s1eA 224 52.83 a.39.1.5 112007 1sqnA 261 54.72 a.123.1.1 105944 1ez4A 318 55.88 c.2.1.5,d.162.1.1 64917,64918 3bwwA 307 56.66 2gfsA 372 58.27 d.144.1.7 135109 3bjhA 119 58.54 1a2aA 122 58.97 a.133.1.2 19540 1j75A 67 59.11 a.4.5.19 62673 1ae7A 119 59.96 a.133.1.2 19553 2g58A 121 62.53 a.133.1.2 134645 1a0dA 440 63.24 c.1.15.3 29533 2vc7A 314 63.51 1s8iA 121 65.84 a.133.1.2 98735 1hplA 449 66.04 b.12.1.2,c.69.1.19 23639,34787 1hnjA 317 66.91 c.95.1.2,c.95.1.2 35969,35970 2q0tA 263 66.96 1vapA 123 67.00 a.133.1.2 19548 1x9dA 538 67.03 a.102.2.1 121810 1y4lA 121 67.05 a.133.1.2 122624 2ebdA 309 67.32 2cvzA 289 67.37 a.100.1.1,c.2.1.6 130890,130891 2gxgA 146 67.60 1rcwA 231 67.67 a.132.1.4 97299 2i0kA 561 67.80 2fbkA 181 68.53 a.4.5.28 133247 1bjtA 793 69.16 e.11.1.1 43249 1wpnA 188 70.01 c.107.1.1 114826 2nxoA 291 70.24 1oqsB 122 70.92 a.133.1.2 93428 1z9hA 290 70.97 a.45.1.1,c.47.1.5 124758,124759 1g8mA 593 71.04 c.24.1.3,c.97.1.4 60371,60372 1zlbA 122 71.43 a.133.1.2 125248 1w9iA 770 71.46 2fbiA 142 72.62 a.4.5.28 133246 1kb9D 246 73.11 a.3.1.3,f.23.11.1 77317,77318 2jh3A 474 73.31 2pfxA 191 73.97 2p71A 132 74.40 a.39.2.1 139516 1gw5A 621 74.88 a.118.1.10 70629 1dwkA 156 75.36 a.35.1.4,d.72.1.1 17075,39606 3c5vA 316 75.94 2cmd 312 77.20 1vkrA 125 77.71 c.44.2.1 108689 1d7uA 433 79.12 c.67.1.4 34439 1jltB 122 79.21 a.133.1.2 66868 1mc2A 122 81.18 a.133.1.2 74622 1b3uA 588 82.50 a.118.1.2 19135 2hc9A 491 83.90 2aaxA 275 84.31 1jltA 122 84.72 a.133.1.2 66867 1im8A 244 84.91 c.66.1.14 66212 1wtjA 343 85.54 1tf5A 844 85.57 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1otvA 259 85.81 a.132.1.4 93526 1heiA 451 86.03 c.37.1.14,c.37.1.14 32463,32464 1qqeA 292 86.41 a.118.8.1 19210 2bkhA 814 86.98 1s4vA 229 86.98 d.3.1.1 98511 1x6vA 630 87.11 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1r5rA 119 87.30 a.39.2.1 97104 2v9yA 334 88.88 1zchA 255 89.94 d.90.1.1 124908