# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 1.55e-30 3b57A 209 8.32e-23 2pq7A 220 1.39e-21 2o08A 188 3.80e-21 3ccgA 190 3.04e-20 2ogiA 196 9.83e-19 2hekA 371 3.60e-16 a.211.1.1 136354 1vqrA 297 6.10e-15 a.211.1.3 114015 2q14A 410 1.01e-14 2dqbA 376 1.69e-13 2pgsA 451 8.62e-11 2paqA 201 7.85e-09 a.211.1.1 139643 3bg2A 444 1.42e-08 2parA 201 3.32e-08 1xx7A 184 7.93e-07 a.211.1.1 116143 2hd1A 326 1.90e-06 a.211.1.2 136338 1ynbA 173 2.34e-06 a.211.1.1 123718 2ovyA 362 3.19e-06 1zklA 353 4.26e-06 2r8qA 359 5.62e-06 2ousA 331 8.78e-06 1y2kA 349 1.10e-05 a.211.1.2 122571 1tazA 365 1.50e-05 a.211.1.2 106734 1tbfA 347 2.07e-05 a.211.1.2 106743 1z1lA 345 3.82e-05 2ibnA 250 0.000276 a.211.1.4 137195 2gz4A 207 0.000615 1u6zA 513 0.001866 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1so2A 420 0.002789 a.211.1.2 98936 1vj7A 393 0.06573 a.211.1.1,d.218.1.8 100801,100802 1vfgA 390 0.08150 a.173.1.1,d.218.1.4 108570,108571 2z5kA 890 1.989 2itbA 206 2.021 1dqeA 137 2.266 a.39.2.1 17388 1yb4A 295 2.357 1xfrA 128 2.512 2ifuA 307 3.527 1vpdA 299 4.939 a.100.1.1,c.2.1.6 113951,113952 1bg6 359 6.618 3cumA 302 7.457 1rr7A 129 7.886 a.4.1.14 105075 2cyaA 364 8.044 1eluA 390 12.64 c.67.1.3 34434 1ohvA 472 12.85 c.67.1.4 93031 2z06A 252 12.97 1gbs 185 14.03 3cqyA 370 14.59 1woyA 500 14.62 a.27.1.1,c.26.1.1 121130,121131 1j7jA 178 15.31 c.61.1.1 84131 1qgrA 876 15.56 a.118.1.1 19119 2h78A 302 16.84 2h3bA 494 17.32 1mwvA 714 17.90 a.93.1.3,a.93.1.3 85161,85162 1mzjA 339 18.15 c.95.1.2,c.95.1.2 79700,79701 3bq3A 270 18.56 1wsuA 124 18.83 a.4.5.35,a.4.5.35 121245,121246 1d2mA 665 19.47 c.37.1.19,c.37.1.19 32417,32418 1s3jA 155 19.58 a.4.5.28 98437 2d5bA 500 20.40 a.27.1.1,c.26.1.1 131268,131269 2gfsA 372 21.95 d.144.1.7 135109 1ki9A 192 22.22 c.37.1.1 84404 3bjdA 332 22.45 2ekcA 262 23.56 2po3A 424 24.55 2p3eA 420 24.62 2cy8A 453 24.67 1miwA 404 25.20 a.173.1.1,d.218.1.4 79162,79163 2cfmA 561 25.82 1szqA 483 26.97 e.44.1.1 99045 1vkrA 125 29.09 c.44.2.1 108689 2hivA 621 30.15 1qazA 351 30.59 a.102.3.1 18848 1le6A 123 31.70 a.133.1.2 73862 1khyA 148 31.81 a.174.1.1 77410 2fstX 367 32.55 1s2wA 295 33.23 c.1.12.7 98407 1e6cA 173 33.87 c.37.1.2 59296 2j7tA 302 35.29 1o6zA 303 36.89 c.2.1.5,d.162.1.1 81107,81108 1gtvA 214 37.34 c.37.1.1 70537 2vglA 621 37.87 2hp0A 466 39.49 1n3lA 372 40.64 c.26.1.1 79966 2j16A 182 43.75 1a76 326 45.04 1wpnA 188 45.15 c.107.1.1 114826 2eb0A 307 45.70 1topA 162 45.92 a.39.1.5 17223 1o54A 277 46.71 c.66.1.13 92482 1ae7A 119 47.82 a.133.1.2 19553 1qgiA 259 49.78 d.2.1.7 37001 3bj6A 152 50.09 2pgd 482 52.17 1heiA 451 52.25 c.37.1.14,c.37.1.14 32463,32464 2q4aA 330 52.36 b.82.2.8 139839 1t7rA 269 52.49 a.123.1.1 106635 1tf5A 844 53.26 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 3bk2A 562 55.49 1s4vA 229 55.96 d.3.1.1 98511 2de3A 365 58.17 3c5vA 316 59.68 2g8yA 385 60.25 1vg0A 650 60.42 c.3.1.3,d.16.1.6 108596,108597 1zp4A 304 62.13 1o4sA 389 62.16 c.67.1.1 86620 1qnaA 200 63.56 d.129.1.1,d.129.1.1 41226,41227 2g58A 121 63.77 a.133.1.2 134645 1yi8A 351 64.01 1yb2A 275 66.94 c.66.1.13 122868 1y4lA 121 68.48 a.133.1.2 122624 2fbiA 142 69.06 a.4.5.28 133246 1ccwA 137 70.07 c.23.6.1 31238 1a0dA 440 70.09 c.1.15.3 29533 1v72A 356 70.09 c.67.1.1 119860 1im8A 244 70.14 c.66.1.14 66212 1a2aA 122 70.49 a.133.1.2 19540 2cxiA 348 71.27 1z2iA 358 72.22 1i19A 561 73.39 d.58.32.3,d.145.1.1 61522,61523 2p71A 132 73.56 a.39.2.1 139516 1j75A 67 75.11 a.4.5.19 62673 1s1eA 224 75.96 a.39.1.5 112007 2akoA 251 76.35 c.73.1.3 126923 3cdhA 155 76.78 1mc2A 122 77.46 a.133.1.2 74622 1w8gA 234 77.94 2qulA 290 78.14 1jltA 122 78.51 a.133.1.2 66867 1ra6A 461 78.61 e.8.1.4 104879 1d7uA 433 79.00 c.67.1.4 34439 1s8iA 121 80.06 a.133.1.2 98735 2es9A 115 80.42 a.247.1.1 132318 1oihA 301 81.03 b.82.2.5 93051 2gwhA 298 81.09 2z0hA 197 81.73 1vfsA 386 81.95 b.49.2.2,c.1.6.1 108584,108585 1g8mA 593 83.41 c.24.1.3,c.97.1.4 60371,60372 1bg6A 359 83.56 a.100.1.5,c.2.1.6 18810,30214 1vrvA 101 83.94 1zlbA 122 83.96 a.133.1.2 125248 2rdpA 150 84.26 1nxuA 333 84.30 c.122.1.1 86389 2cvbA 188 85.17 c.47.1.10 130859 1sqnA 261 89.41 a.123.1.1 105944 1oqsB 122 89.45 a.133.1.2 93428