# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 3.50e-28 3b57A 209 3.14e-21 2pq7A 220 1.50e-18 2o08A 188 3.25e-18 3ccgA 190 2.03e-17 2ogiA 196 8.48e-17 2hekA 371 1.70e-13 a.211.1.1 136354 2q14A 410 7.44e-13 1vqrA 297 4.93e-12 a.211.1.3 114015 2dqbA 376 1.40e-10 2pgsA 451 2.34e-09 2paqA 201 8.06e-08 a.211.1.1 139643 2parA 201 1.22e-07 3bg2A 444 2.35e-06 1xx7A 184 4.24e-06 a.211.1.1 116143 2hd1A 326 6.66e-05 a.211.1.2 136338 1zklA 353 7.20e-05 2ovyA 362 8.19e-05 2ousA 331 0.000121 1tazA 365 0.000173 a.211.1.2 106734 1ynbA 173 0.000226 a.211.1.1 123718 2r8qA 359 0.000231 1tbfA 347 0.000278 a.211.1.2 106743 1y2kA 349 0.000313 a.211.1.2 122571 1z1lA 345 0.000391 2gz4A 207 0.002189 1u6zA 513 0.006796 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2ibnA 250 0.008706 a.211.1.4 137195 1vj7A 393 0.3822 a.211.1.1,d.218.1.8 100801,100802 1so2A 420 1.572 a.211.1.2 98936 2q4aA 330 2.262 b.82.2.8 139839 1mwvA 714 2.402 a.93.1.3,a.93.1.3 85161,85162 2z06A 252 2.486 1szqA 483 3.536 e.44.1.1 99045 1nthA 458 3.755 c.1.25.1 80730 1amuA 563 4.072 e.23.1.1 43351 2ifuA 307 7.249 1eluA 390 7.852 c.67.1.3 34434 1woyA 500 8.988 a.27.1.1,c.26.1.1 121130,121131 2z1mA 345 9.126 1yi8A 351 9.163 2nu8B 388 9.193 1bu8A 452 9.396 b.12.1.2,c.69.1.19 23647,34795 2cunA 410 10.44 1mzjA 339 11.17 c.95.1.2,c.95.1.2 79700,79701 2bptA 861 11.95 a.118.1.1 128951 2vn4A 599 13.02 2fnuA 375 13.44 c.67.1.4 133831 2d5bA 500 14.13 a.27.1.1,c.26.1.1 131268,131269 1dqeA 137 14.65 a.39.2.1 17388 1gteA 1025 14.99 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2hc9A 491 16.95 1vfgA 390 17.37 a.173.1.1,d.218.1.4 108570,108571 2itbA 206 17.68 2i0kA 561 19.61 1bs0A 384 21.05 c.67.1.4 34490 1xfrA 128 21.30 1v93A 296 22.11 c.1.23.1 100532 1j7jA 178 22.84 c.61.1.1 84131 1yb4A 295 23.39 1c7gA 456 23.59 c.67.1.2 90415 2e7zA 727 23.64 1gbs 185 24.20 2bwnA 401 24.63 c.67.1.4 129368 1r6uA 437 25.47 c.26.1.1 97163 2gphA 364 25.86 1s4vA 229 26.08 d.3.1.1 98511 2c4mA 796 26.88 2pgd 482 27.02 1ez4A 318 27.09 c.2.1.5,d.162.1.1 64917,64918 2qc0A 373 28.75 1j09A 468 28.85 a.97.1.1,c.26.1.1 77025,77026 2gfsA 372 31.91 d.144.1.7 135109 1u6eA 335 31.93 c.95.1.2,c.95.1.2 119568,119569 1qgrA 876 32.16 a.118.1.1 19119 2j1oA 268 33.94 1qsaA 618 36.08 a.118.5.1,d.2.1.6 19182,36988 3cqyA 370 36.95 1le6A 123 37.88 a.133.1.2 73862 1ki9A 192 38.50 c.37.1.1 84404 2cyaA 364 38.63 2e52A 300 38.73 1z9hA 290 39.63 a.45.1.1,c.47.1.5 124758,124759 1qazA 351 39.84 a.102.3.1 18848 2vccA 891 40.00 2z5kA 890 40.19 1eg7A 557 40.41 c.37.1.10 32241 2de3A 365 41.59 1zgdA 312 42.18 1jf9A 408 42.61 c.67.1.3 62931 3bq3A 270 43.59 1s3jA 155 44.92 a.4.5.28 98437 2j1pA 293 45.09 2f2uA 402 45.83 3b5qA 482 46.72 2i33A 258 48.18 1xwsA 313 48.60 d.144.1.7 116133 2f6kA 307 49.70 c.1.9.15 133047 2ie4A 589 50.08 a.118.1.2 137291 4ubpC 570 50.29 b.92.1.1,c.1.9.2 28431,29053 2o0uA 364 50.52 d.144.1.7 138868 2jgdA 933 50.83 2qwwA 154 51.49 2qolA 376 52.23 2aaxA 275 52.55 2v9yA 334 52.71 1oihA 301 54.33 b.82.2.5 93051 1tf5A 844 54.79 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1lam 484 55.56 3bujA 397 56.51 1gwiA 411 57.61 a.104.1.1 76364 1n28A 124 57.94 a.133.1.2 91550 1dqpA 230 60.08 c.61.1.1 34069 1y0zA 330 60.43 b.82.2.8 116317 1zj8A 566 61.73 1oe8A 211 62.41 a.45.1.1,c.47.1.5 86905,86906 1dofA 403 63.02 a.127.1.1 19429 1kcwA 1046 63.06 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1mdbA 539 63.30 e.23.1.1 79008 1exbA 332 64.21 c.1.7.1 28666 2ptsA 462 65.73 3bwwA 307 67.02 1f5vA 240 69.49 d.90.1.1 40255 2bikB 313 70.14 2cvbA 188 70.47 c.47.1.10 130859 1ovlA 271 71.47 a.123.1.1 87455 2fnaA 357 71.95 a.4.5.11,c.37.1.20 133809,133810 2e57A 637 72.04 1qgiA 259 72.54 d.2.1.7 37001 3boqA 160 72.66 2f57A 317 73.57 2h78A 302 74.16 1ppjD 241 74.54 a.3.1.3,f.23.11.1 104258,104259 1ii7A 333 74.79 d.159.1.4 62415 1o17A 345 75.13 a.46.2.1,c.27.1.1 80765,80766 2hs3A 603 75.18 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1t7rA 269 75.25 a.123.1.1 106635 1zowA 313 75.59 5eauA 548 78.74 a.102.4.1,a.128.1.3 18851,19443 3beoA 375 79.35 2q4xA 221 79.71 a.132.1.3 139880 1ee4A 423 80.39 a.118.1.1 19128 1vliA 385 80.74 b.85.1.1,c.1.10.6 108830,108831 1yizA 429 81.80 c.67.1.1 123375 1ti6A 875 82.23 b.52.2.2,c.81.1.1 106974,106975 1ga8A 311 84.45 c.68.1.4 34516 1vkrA 125 84.91 c.44.2.1 108689 2b7aA 293 85.78 1odmA 331 86.72 b.82.2.1 86875 2esbA 188 87.81 2g8yA 385 89.54