# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 5.84e-29 3b57A 209 5.03e-22 2pq7A 220 4.94e-20 2o08A 188 8.71e-20 3ccgA 190 6.02e-19 2ogiA 196 5.39e-18 2hekA 371 7.61e-15 a.211.1.1 136354 1vqrA 297 2.76e-14 a.211.1.3 114015 2q14A 410 1.14e-13 2dqbA 376 4.29e-12 2pgsA 451 4.53e-10 2paqA 201 1.88e-08 a.211.1.1 139643 2parA 201 4.93e-08 3bg2A 444 6.33e-08 1xx7A 184 1.93e-06 a.211.1.1 116143 1zklA 353 8.44e-06 2hd1A 326 1.38e-05 a.211.1.2 136338 2ovyA 362 1.50e-05 2ousA 331 2.79e-05 1tbfA 347 4.15e-05 a.211.1.2 106743 1ynbA 173 4.65e-05 a.211.1.1 123718 1tazA 365 5.05e-05 a.211.1.2 106734 2r8qA 359 5.62e-05 1y2kA 349 7.59e-05 a.211.1.2 122571 1z1lA 345 9.85e-05 2gz4A 207 0.000339 1u6zA 513 0.000550 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2ibnA 250 0.001611 a.211.1.4 137195 1so2A 420 0.008672 a.211.1.2 98936 1vj7A 393 0.03694 a.211.1.1,d.218.1.8 100801,100802 1vfgA 390 0.05529 a.173.1.1,d.218.1.4 108570,108571 1bg6 359 3.335 3cumA 302 3.590 2ifuA 307 4.380 2itbA 206 4.724 1mzjA 339 5.909 c.95.1.2,c.95.1.2 79700,79701 1gbs 185 6.831 1dqeA 137 8.123 a.39.2.1 17388 2z06A 252 9.686 1pa2A 306 9.904 a.93.1.1 18693 1xfrA 128 11.05 3cqyA 370 11.54 1yb4A 295 11.82 2z5kA 890 12.22 1tf5A 844 13.49 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1le6A 123 13.62 a.133.1.2 73862 1eluA 390 13.84 c.67.1.3 34434 2pgd 482 14.49 1ki9A 192 15.05 c.37.1.1 84404 1mwvA 714 16.04 a.93.1.3,a.93.1.3 85161,85162 1vpdA 299 18.02 a.100.1.1,c.2.1.6 113951,113952 2cfmA 561 18.45 1szqA 483 18.69 e.44.1.1 99045 2de3A 365 19.43 2cyaA 364 20.25 1u6eA 335 21.68 c.95.1.2,c.95.1.2 119568,119569 2hp0A 466 24.87 2ebdA 309 25.59 2h78A 302 25.75 2gfsA 372 26.07 d.144.1.7 135109 1d2mA 665 28.13 c.37.1.19,c.37.1.19 32417,32418 1woyA 500 28.29 a.27.1.1,c.26.1.1 121130,121131 2v9yA 334 28.51 1miwA 404 29.61 a.173.1.1,d.218.1.4 79162,79163 1v93A 296 29.69 c.1.23.1 100532 1ae7A 119 31.40 a.133.1.2 19553 2cy8A 453 32.68 1i19A 561 34.07 d.58.32.3,d.145.1.1 61522,61523 3bq3A 270 34.94 2pfxA 191 35.40 2d5bA 500 35.80 a.27.1.1,c.26.1.1 131268,131269 2fstX 367 37.89 1n28A 124 39.22 a.133.1.2 91550 1s3jA 155 39.43 a.4.5.28 98437 1ez4A 318 39.46 c.2.1.5,d.162.1.1 64917,64918 2ekcA 262 39.57 1sqnA 261 39.89 a.123.1.1 105944 1qazA 351 40.75 a.102.3.1 18848 1vg0A 650 40.90 c.3.1.3,d.16.1.6 108596,108597 2i0kA 561 40.96 2jg2A 422 41.56 1j7jA 178 41.90 c.61.1.1 84131 2j7tA 302 42.10 3bwwA 307 42.32 1r9lA 309 42.93 c.94.1.1 97262 1qgiA 259 43.22 d.2.1.7 37001 1heiA 451 44.15 c.37.1.14,c.37.1.14 32463,32464 1bs0A 384 44.35 c.67.1.4 34490 2h3bA 494 44.93 1yi8A 351 45.35 1t7rA 269 45.59 a.123.1.1 106635 2q4aA 330 45.64 b.82.2.8 139839 1bg6A 359 46.49 a.100.1.5,c.2.1.6 18810,30214 2aaxA 275 47.40 1hnjA 317 47.58 c.95.1.2,c.95.1.2 35969,35970 2g58A 121 48.67 a.133.1.2 134645 1s4vA 229 48.81 d.3.1.1 98511 2jh3A 474 48.95 2bptA 861 49.18 a.118.1.1 128951 1a2aA 122 50.73 a.133.1.2 19540 1qgrA 876 52.28 a.118.1.1 19119 1jltB 122 52.38 a.133.1.2 66868 1ohvA 472 52.65 c.67.1.4 93031 1oihA 301 53.34 b.82.2.5 93051 1vapA 123 54.16 a.133.1.2 19548 2e67A 264 54.56 1gtvA 214 54.70 c.37.1.1 70537 2hivA 621 55.01 1s8iA 121 55.22 a.133.1.2 98735 1vkrA 125 55.23 c.44.2.1 108689 1j75A 67 55.72 a.4.5.19 62673 2pt5A 168 55.90 1abbA 828 56.01 c.87.1.4 35536 1y4lA 121 56.32 a.133.1.2 122624 2g8yA 385 56.98 1zlbA 122 57.39 a.133.1.2 125248 1qqeA 292 57.70 a.118.8.1 19210 3bj6A 152 58.25 1m6sA 347 58.28 c.67.1.1 78701 1qgjA 300 58.49 a.93.1.1 18691 3bsoA 510 59.42 1oqsB 122 60.73 a.133.1.2 93428 1ovlA 271 61.01 a.123.1.1 87455 2qezA 455 61.04 3c5vA 316 61.22 1jltA 122 62.93 a.133.1.2 66867 1qnaA 200 63.62 d.129.1.1,d.129.1.1 41226,41227 1yz7A 188 63.69 1khtA 192 63.98 c.37.1.1 84401 2gxgA 146 65.07 1mc2A 122 66.90 a.133.1.2 74622 1yxlA 119 68.76 a.133.1.2 124191 2grjA 192 69.25 1j1nA 492 71.44 c.94.1.1 83978 2qq9A 226 73.50 1zowA 313 74.20 1vhtA 218 74.34 c.37.1.1 100700 1a76 326 74.64 2fhzB 108 75.78 d.243.1.2 133506 1phkA 298 75.80 d.144.1.7 41635 2p71A 132 76.72 a.39.2.1 139516 2hc9A 491 76.88 1w9iA 770 78.18 2cvbA 188 79.31 c.47.1.10 130859 1rhsA 296 80.80 c.46.1.2,c.46.1.2 32703,32704 1rr7A 129 82.57 a.4.1.14 105075 1yb2A 275 82.73 c.66.1.13 122868 1s6bA 119 83.08 a.133.1.2 98592 1kb9D 246 83.38 a.3.1.3,f.23.11.1 77317,77318 1a0dA 440 84.10 c.1.15.3 29533 2p3eA 420 85.23 1lehA 364 85.73 c.2.1.7,c.58.1.1 30268,33916 1s6bB 119 86.24 a.133.1.2 98593 1topA 162 86.64 a.39.1.5 17223 1x9dA 538 88.68 a.102.2.1 121810