# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 6.63e-29 3b57A 209 6.86e-22 2pq7A 220 4.29e-20 2o08A 188 1.98e-18 3ccgA 190 3.30e-17 2ogiA 196 4.59e-17 2hekA 371 2.19e-14 a.211.1.1 136354 1vqrA 297 6.28e-13 a.211.1.3 114015 2q14A 410 6.95e-12 2dqbA 376 1.85e-09 2pgsA 451 3.71e-08 2paqA 201 1.61e-07 a.211.1.1 139643 2parA 201 1.86e-07 2ovyA 362 2.50e-06 2hd1A 326 3.38e-06 a.211.1.2 136338 1xx7A 184 6.42e-06 a.211.1.1 116143 2r8qA 359 1.16e-05 1y2kA 349 1.29e-05 a.211.1.2 122571 3bg2A 444 1.31e-05 1zklA 353 1.40e-05 1tazA 365 4.90e-05 a.211.1.2 106734 2ousA 331 6.46e-05 1tbfA 347 7.04e-05 a.211.1.2 106743 1z1lA 345 0.000179 1ynbA 173 0.000445 a.211.1.1 123718 2gz4A 207 0.003329 1u6zA 513 0.02500 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1vj7A 393 0.02500 a.211.1.1,d.218.1.8 100801,100802 1so2A 420 0.03176 a.211.1.2 98936 2ibnA 250 0.08968 a.211.1.4 137195 1vfgA 390 0.3862 a.173.1.1,d.218.1.4 108570,108571 2g8yA 385 1.211 1nxuA 333 2.905 c.122.1.1 86389 1ii7A 333 3.953 d.159.1.4 62415 2q8uA 336 4.616 1z2iA 358 5.244 2dxnA 274 6.531 3cqyA 370 7.222 1b3uA 588 7.688 a.118.1.2 19135 1wtjA 343 9.120 2gfsA 372 9.514 d.144.1.7 135109 1vbiA 344 13.04 1wviA 257 14.77 c.108.1.14 114915 2ifuA 307 15.38 1v9nA 360 17.22 2cxiA 348 18.35 3c4vA 426 18.55 1dqeA 137 20.56 a.39.2.1 17388 1zjjA 263 21.08 1k07A 263 23.80 d.157.1.1 77218 2gekA 406 24.26 1w9iA 770 27.31 1vkrA 125 27.46 c.44.2.1 108689 2q0iA 303 27.61 3ct9A 356 29.97 2j66A 428 30.22 2bkhA 814 31.01 2eb0A 307 34.25 1wpnA 188 35.88 c.107.1.1 114826 1zchA 255 36.74 d.90.1.1 124908 3bgvA 313 39.77 1tf5A 844 40.82 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1azsA 220 41.18 d.58.29.1 39416 1xrhA 351 42.09 c.122.1.1 115871 2c4nA 250 42.85 c.108.1.14 129837 2qisA 374 42.89 2fstX 367 44.52 1rlmA 271 45.31 c.108.1.10 111860 1j7jA 178 46.62 c.61.1.1 84131 1o6zA 303 48.22 c.2.1.5,d.162.1.1 81107,81108 2z06A 252 49.39 1ycoA 279 50.06 2b9hA 353 50.12 2ie4A 589 50.22 a.118.1.2 137291 2itbA 206 51.00 1u2cA 246 51.76 b.1.6.2,d.272.1.1 107610,107611 2dyuA 334 61.91 1x6vA 630 64.23 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1t4hA 290 65.79 d.144.1.7 106420 2novA 496 66.13 1wtaA 275 67.93 2yqzA 263 68.44 1zsxA 347 68.56 1wc3A 219 69.32 d.58.29.1 114495 2gphA 364 69.82 1hqsA 423 71.09 c.77.1.1 61154 1gbs 185 72.55 1lldA 319 72.58 c.2.1.5,d.162.1.1 30177,42144 2iw1A 374 72.97 c.87.1.8 137738 1o4vA 183 73.82 c.23.8.1 86628 1exbA 332 73.94 c.1.7.1 28666 2c3nA 247 74.76 2dt5A 211 75.12 a.4.5.38,c.2.1.12 131708,131709 1wy5A 317 77.03 c.26.2.5,d.229.1.1 121428,121429 1wa5C 960 77.32 a.118.1.1 114433 2akoA 251 78.02 c.73.1.3 126923 1vrvA 101 84.13 2p8jA 209 86.73 1d8wA 426 86.76 c.1.15.2 29394 1knwA 425 87.06 b.49.2.3,c.1.6.1 90969,90970 1rtrA 301 87.99 a.128.1.1 97820 1s8eA 333 88.64 d.159.1.4 105368 1sxjC 340 88.93 a.80.1.1,c.37.1.20 106085,106086 1a2aA 122 89.12 a.133.1.2 19540