# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 8.16e-14 3b57A 209 5.82e-11 2pq7A 220 2.70e-08 2ogiA 196 5.76e-06 3ccgA 190 1.41e-05 2o08A 188 1.98e-05 2hekA 371 0.000389 a.211.1.1 136354 2paqA 201 0.001825 a.211.1.1 139643 2hd1A 326 0.007250 a.211.1.2 136338 2dqbA 376 0.007344 2ovyA 362 0.007564 2q14A 410 0.007795 1tbfA 347 0.01306 a.211.1.2 106743 2parA 201 0.01308 1y2kA 349 0.01803 a.211.1.2 122571 1xx7A 184 0.01810 a.211.1.1 116143 1zklA 353 0.02581 2r8qA 359 0.02944 2ousA 331 0.04243 1vqrA 297 0.07594 a.211.1.3 114015 2pgsA 451 0.07701 1vj7A 393 0.1311 a.211.1.1,d.218.1.8 100801,100802 1tazA 365 0.2608 a.211.1.2 106734 1z1lA 345 0.2743 3bg2A 444 0.3704 1so2A 420 2.920 a.211.1.2 98936 1ynbA 173 4.005 a.211.1.1 123718 1rqjA 299 7.549 a.128.1.1 97744 2e52A 300 8.637 1u6zA 513 9.033 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2j1pA 293 9.203 1mw9X 592 9.327 e.10.1.1 91480 2gz4A 207 9.438 2bkhA 814 11.83 1dlyA 164 15.71 a.1.1.1 14983 2v26A 784 16.78 1gvfA 286 16.97 c.1.10.2 70599 2cycA 375 18.30 1dwkA 156 18.49 a.35.1.4,d.72.1.1 17075,39606 2qneA 495 20.38 1rtrA 301 20.71 a.128.1.1 97820 1v33A 366 22.48 d.264.1.1 100278 2dpoA 319 22.57 2o4dA 165 22.73 a.152.1.3 138907 1k20A 310 23.92 c.107.1.1 68027 3c4rA 151 24.36 2q0tA 263 24.50 2au3A 407 27.28 2dg6A 222 30.17 2ivxA 257 31.22 1ynuA 473 32.67 c.67.1.4 123762 2gfsA 372 33.34 d.144.1.7 135109 1ybdA 239 36.86 c.73.1.3 122884 1z0xA 220 38.92 a.4.1.9,a.121.1.1 124334,124335 2pq6A 482 39.55 2va1A 256 41.73 1m7yA 435 43.23 c.67.1.4 78761 2acvA 463 45.33 2j1oA 268 45.44 2ia2A 265 45.47 1gs5A 258 45.53 c.73.1.2 70395 2fk8A 318 46.09 c.66.1.18 133648 1s69A 124 46.75 a.1.1.1 105305 1c1dA 355 50.22 c.2.1.7,c.58.1.1 30270,33918 1b3uA 588 52.18 a.118.1.2 19135 2dplA 308 53.23 1xo1A 291 54.44 a.60.7.1,c.120.1.2 18086,33356 2vefA 314 54.80 2vcnA 261 57.23 2c6qA 351 60.24 2qulA 290 60.78 2vchA 480 61.11 1fxxA 482 61.83 c.55.3.5 33726 1otvA 259 61.88 a.132.1.4 93526 1ii7A 333 62.28 d.159.1.4 62415 2v7bA 529 64.05 1auiA 521 64.54 d.159.1.3 42085 2ftzA 284 66.09 1sxjA 511 66.81 a.80.1.1,c.37.1.20 106081,106082 1idrA 136 67.73 a.1.1.1 62301 1w7jA 795 69.10 b.34.3.1,c.37.1.9 120688,120689 2bneA 241 70.66 c.73.1.3 128824 2qxlA 658 70.83 1v4eA 299 72.05 a.128.1.1 100296 2a5lA 200 72.34 c.23.5.8 126176 1dlwA 116 72.63 a.1.1.1 14982 1y1xA 191 72.75 a.39.1.8 116374 1lehA 364 74.52 c.2.1.7,c.58.1.1 30268,33916 2a1fA 247 74.99 c.73.1.3 125991 1r5rA 119 76.50 a.39.2.1 97104 1zavA 180 76.58 2fstX 367 77.08 1n81A 186 77.55 a.185.1.1 85388 2nu8B 388 78.40 1pz1A 333 79.33 c.1.7.1 95390 2qgqA 304 79.52 2hjpA 290 80.55 2v1xA 591 80.90 3cklA 298 81.17 1eyeA 280 82.87 c.1.21.1 29672 1d2fA 390 85.66 c.67.1.3 34411 1d4aA 273 86.53 c.23.5.3 31219 1wy5A 317 86.89 c.26.2.5,d.229.1.1 121428,121429 1lm5A 214 87.38 d.211.2.1 74029 1zdyA 307 87.66 d.313.1.1 124961 2e3bA 344 88.47 a.93.1.1 132024 2hmcA 344 88.58 2rhsB 800 88.63 1wdcC 156 89.22 a.39.1.5 17317 1ee4A 423 89.54 a.118.1.1 19128