# List of top-scoring protein chains for T0470.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pjqA	231	5.75e-11		
2qgsA	225	2.84e-10		
3b57A	209	3.74e-10		
2pq7A	220	7.95e-10		
2o08A	188	5.38e-07		
3ccgA	190	7.18e-07		
2ogiA	196	1.18e-06		
2dqbA	376	1.22e-06		
2hekA	371	3.85e-06	a.211.1.1	136354
2o6iA	480	2.24e-05	a.211.1.1	138920
2q14A	410	0.008271		
1xx7A	184	0.03497	a.211.1.1	116143
3bg2A	444	0.04032		
2pgsA	451	0.04637		
2chmA	326	0.1675	a.211.1.2	130472
1xozA	364	0.1842	a.211.1.2	115719
1tbfA	347	0.1986	a.211.1.2	106743
1z1lA	345	0.2147		
2hd1A	326	0.4549	a.211.1.2	136338
2yy2A	333	0.4574		
1t9rA	366	0.6537	a.211.1.2	106725
1udtA	324	0.6792	a.211.1.2	99221
2h44A	326	0.6823	a.211.1.2	136069
3b2rA	330	0.6889		
1rkpA	326	0.7902	a.211.1.2	97620
2huoA	289	0.9333	a.211.1.4	136778
3bjcA	878	1.360		
2cqzA	177	1.549		
2ibnA	250	1.591	a.211.1.4	137195
1yoyA	175	2.778	a.211.1.1	123795
2ousA	331	3.257		
2qykA	335	3.469		
2qylA	337	3.491		
1f0jA	377	3.699	a.211.1.2	19346
1rorA	378	3.700	a.211.1.2	111901
1tb5A	381	3.765	a.211.1.2	106735
1xm6A	398	3.774	a.211.1.2	115471
2r8qA	359	3.851		
2oupA	331	4.010		
1zklA	353	4.827		
2qynA	328	5.615		
1tbbA	332	5.656	a.211.1.2	106741
2fm0A	361	5.676	a.211.1.2	133752
1oynA	360	5.678	a.211.1.2	87609
1y2kA	349	5.707	a.211.1.2	122571
2ovyA	362	5.735		
1zknA	334	5.764	a.211.1.2	125201
1mkdA	328	6.066	a.211.1.2	84982
2qymA	358	6.115		
1ynbA	173	7.017	a.211.1.1	123718
2paqA	201	10.77	a.211.1.1	139643
2ouvA	331	11.27		
2parA	201	17.24		
2pw3A	327	21.74		
1m6kA	251	25.81	e.3.1.1	78695
2fnoA	248	27.15	a.45.1.1,c.47.1.5	133821,133822
1zmrA	387	34.81		
1hlbA	158	39.88	a.1.1.2	15625
1qjpA	171	42.41	f.4.1.1	43742
1bxwA	172	42.80	f.4.1.1	43743
1wqlA	459	48.99	b.33.1.2,d.129.3.3	121170,121171
1tazA	365	61.06	a.211.1.2	106734
2d51A	406	61.10		
2floA	524	66.17	a.211.1.5,c.55.1.8,c.55.1.8	133733,133734,133735
1u6zA	513	66.28	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
2yzaA	276	71.25		
2akoA	251	72.78	c.73.1.3	126923
1m7xA	617	73.48	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1g90A	176	75.30	f.4.1.1	60388
2ge4A	177	76.56	f.4.1.1	135048
2h6dA	276	78.44		
1jr3D	343	80.54	a.80.1.1,c.37.1.20	63251,63252