# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 2.96e-21 3b57A 209 1.24e-18 2pq7A 220 1.20e-15 3ccgA 190 1.17e-13 2o08A 188 6.19e-13 2ogiA 196 1.46e-12 1vqrA 297 1.83e-10 a.211.1.3 114015 2dqbA 376 1.99e-09 2hekA 371 4.44e-09 a.211.1.1 136354 2q14A 410 1.37e-07 2pgsA 451 7.66e-06 3bg2A 444 2.10e-05 2ousA 331 0.000147 1u6zA 513 0.000229 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2paqA 201 0.000327 a.211.1.1 139643 2r8qA 359 0.000448 1xx7A 184 0.000693 a.211.1.1 116143 2hd1A 326 0.000830 a.211.1.2 136338 2parA 201 0.001000 1ynbA 173 0.001033 a.211.1.1 123718 2ovyA 362 0.001107 1zklA 353 0.001500 1tazA 365 0.001887 a.211.1.2 106734 1yoyA 175 0.002003 a.211.1.1 123795 1z1lA 345 0.002216 1tbfA 347 0.002438 a.211.1.2 106743 2ibnA 250 0.003134 a.211.1.4 137195 1rkpA 326 0.003156 a.211.1.2 97620 1tbbA 332 0.004556 a.211.1.2 106741 1y2kA 349 0.004580 a.211.1.2 122571 1f0jA 377 0.007201 a.211.1.2 19346 2gz4A 207 0.008690 1vj7A 393 0.1469 a.211.1.1,d.218.1.8 100801,100802 3bq3A 270 2.119 1xfrA 128 2.757 1vfgA 390 5.579 a.173.1.1,d.218.1.4 108570,108571 1so2A 420 5.660 a.211.1.2 98936 1vpdA 299 5.917 a.100.1.1,c.2.1.6 113951,113952 1miwA 404 6.440 a.173.1.1,d.218.1.4 79162,79163 2p71A 132 7.949 a.39.2.1 139516 1g3mA 294 16.19 c.37.1.5 83268 2q0iA 303 22.27 2is9A 204 23.26 2qq9A 226 23.56 3cj1A 456 24.46 1ls6A 295 26.54 c.37.1.5 91115 1aquA 297 27.34 c.37.1.5 31942 1dqeA 137 29.57 a.39.2.1 17388 1z7aA 308 31.97 c.6.2.6 124591 4mbp 370 34.68 1ohvA 472 37.07 c.67.1.4 93031 2de3A 365 37.75 1v0jA 399 38.26 1jdrA 294 38.38 a.93.1.1 62908 2r0bA 154 38.85 2iw0A 254 39.91 c.6.2.3 137737 2e0tA 151 40.47 1w8sA 263 40.54 c.1.10.1 120744 1qbjA 81 40.60 a.4.5.19 16155 1evyA 366 42.26 a.100.1.6,c.2.1.6 18811,30215 2c78A 405 44.63 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 3bjhA 119 45.11 2pgfA 371 47.10 2zblA 421 47.41 2cu3A 64 49.94 2cc0A 195 50.69 c.6.2.3 130209 2akoA 251 51.09 c.73.1.3 126923 1frb 315 51.33 1omp 370 54.13 2c1gA 431 55.82 c.6.2.3,d.341.1.1 129632,129633 1oohA 126 56.01 a.39.2.1 93383 2f2sA 406 56.65 2nt2A 145 56.67 1j99A 293 59.69 c.37.1.5 71618 2ia4A 287 59.94 1mwvA 714 60.81 a.93.1.3,a.93.1.3 85161,85162 1bg6 359 61.15 2ac4A 309 61.49 1dliA 402 61.66 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1lw3A 657 62.31 b.55.1.8,c.45.1.3 91152,91153 1lam 484 63.99 1ez4A 318 65.94 c.2.1.5,d.162.1.1 64917,64918 1anf 370 66.17 1uqwA 509 68.82 c.94.1.1 99799 1uiuA 502 69.51 c.94.1.1 99434 2ekcA 262 70.54 2ifuA 307 70.75 1h16A 759 71.73 c.7.1.1 76462 2jgzB 260 72.03 1vr5A 547 73.32 c.94.1.1 120437 1l6rA 227 73.43 c.108.1.10 77768 1xocA 520 74.00 c.94.1.1 122201 1zp2A 235 74.61 1ii2A 524 74.95 c.91.1.1,c.109.1.1 66146,66147 2obbA 142 76.30 1yz4A 160 78.38 1p9eA 331 78.56 d.157.1.5 104088 1wpnA 188 78.73 c.107.1.1 114826 1le6A 123 82.18 a.133.1.2 73862 1rxwA 336 82.72 a.60.7.1,c.120.1.2 98059,98060 1k20A 310 85.36 c.107.1.1 68027 1fmjA 351 86.78 c.37.1.5 59879 2f4dA 184 87.51 1lucB 324 88.29 c.1.16.1 29548 1m3qA 317 88.81 a.96.1.3,d.129.1.2 91184,91185 1tdzA 272 89.09 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1ax4A 467 89.84 c.67.1.2 34391