# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 3.12e-22 3b57A 209 8.72e-20 2pq7A 220 1.71e-16 3ccgA 190 3.67e-14 2o08A 188 1.15e-13 2ogiA 196 3.06e-13 1vqrA 297 6.92e-11 a.211.1.3 114015 2dqbA 376 3.91e-10 2hekA 371 1.39e-09 a.211.1.1 136354 2q14A 410 2.90e-08 2pgsA 451 1.52e-06 3bg2A 444 1.40e-05 2ousA 331 0.000104 2paqA 201 0.000156 a.211.1.1 139643 2r8qA 359 0.000243 2parA 201 0.000520 1u6zA 513 0.000563 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1xx7A 184 0.000619 a.211.1.1 116143 2hd1A 326 0.000698 a.211.1.2 136338 2ovyA 362 0.000803 1zklA 353 0.001017 1ynbA 173 0.001131 a.211.1.1 123718 1rkpA 326 0.001522 a.211.1.2 97620 1tbfA 347 0.001549 a.211.1.2 106743 1tazA 365 0.001592 a.211.1.2 106734 1z1lA 345 0.002022 1yoyA 175 0.002223 a.211.1.1 123795 2ibnA 250 0.002759 a.211.1.4 137195 1y2kA 349 0.003349 a.211.1.2 122571 1tbbA 332 0.003671 a.211.1.2 106741 1f0jA 377 0.005679 a.211.1.2 19346 2gz4A 207 0.01208 1vj7A 393 0.1318 a.211.1.1,d.218.1.8 100801,100802 3bq3A 270 1.726 1vfgA 390 1.767 a.173.1.1,d.218.1.4 108570,108571 1xfrA 128 5.553 2q0iA 303 6.827 1so2A 420 7.424 a.211.1.2 98936 1miwA 404 7.831 a.173.1.1,d.218.1.4 79162,79163 2p71A 132 9.081 a.39.2.1 139516 1vpdA 299 13.62 a.100.1.1,c.2.1.6 113951,113952 1v0jA 399 13.94 1yi8A 351 14.24 1g3mA 294 15.09 c.37.1.5 83268 3cj1A 456 17.70 1h16A 759 24.04 c.7.1.1 76462 2pgfA 371 25.09 1jdrA 294 26.09 a.93.1.1 62908 1ls6A 295 26.67 c.37.1.5 91115 1aquA 297 27.67 c.37.1.5 31942 2qq9A 226 28.54 2akoA 251 29.36 c.73.1.3 126923 1dqeA 137 29.53 a.39.2.1 17388 2ia4A 287 31.62 1qksA 567 44.86 a.3.1.2,b.70.2.1 15951,27710 2hc9A 491 44.91 4mbp 370 45.71 2i49A 429 46.33 1lw3A 657 48.52 b.55.1.8,c.45.1.3 91152,91153 2obbA 142 48.60 1m3qA 317 50.22 a.96.1.3,d.129.1.2 91184,91185 1ax4A 467 52.75 c.67.1.2 34391 2is9A 204 53.82 1ohvA 472 54.34 c.67.1.4 93031 2de3A 365 56.64 1otkA 249 57.41 a.25.1.2 93521 1dseA 292 60.27 a.93.1.1 59130 2e0tA 151 61.12 1fmjA 351 64.28 c.37.1.5 59879 1w07A 659 64.70 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2oyrA 258 66.56 2cu3A 64 67.67 1lam 484 67.68 1mkrA 294 68.15 a.93.1.1 84997 2a8jA 420 68.35 1omp 370 69.91 1dt1A 129 72.65 a.3.1.1 15811 2r0bA 154 72.80 1lucB 324 73.40 c.1.16.1 29548 1qbjA 81 75.49 a.4.5.19 16155 1anf 370 80.83 1uiuA 502 81.25 c.94.1.1 99434 2nt2A 145 82.25 2c1gA 431 83.95 c.6.2.3,d.341.1.1 129632,129633 1pl8A 356 84.47 b.35.1.2,c.2.1.1 94878,94879 1ztcA 221 84.51 d.157.1.11 125635 1xxsA 122 85.58 3b9cA 144 86.05 2g58A 121 86.50 a.133.1.2 134645 1hfeL 421 87.20 c.96.1.1,d.58.1.5 36018,39001 2f4dA 184 88.37 2f2sA 406 88.58