# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 3.37e-20 3b57A 209 1.42e-17 2pq7A 220 6.14e-15 3ccgA 190 9.81e-13 2o08A 188 1.27e-12 2ogiA 196 7.60e-12 1vqrA 297 2.01e-10 a.211.1.3 114015 2dqbA 376 2.41e-09 2hekA 371 6.15e-09 a.211.1.1 136354 2q14A 410 1.91e-07 2pgsA 451 2.99e-06 3bg2A 444 0.000131 2paqA 201 0.000736 a.211.1.1 139643 2ousA 331 0.000743 1xx7A 184 0.001058 a.211.1.1 116143 1u6zA 513 0.001075 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2parA 201 0.001588 2r8qA 359 0.002030 1ynbA 173 0.002343 a.211.1.1 123718 2hd1A 326 0.002669 a.211.1.2 136338 2ibnA 250 0.003363 a.211.1.4 137195 1yoyA 175 0.004291 a.211.1.1 123795 1zklA 353 0.004490 1rkpA 326 0.004579 a.211.1.2 97620 2ovyA 362 0.005497 1tbfA 347 0.007983 a.211.1.2 106743 1tbbA 332 0.009394 a.211.1.2 106741 1z1lA 345 0.01031 1y2kA 349 0.01037 a.211.1.2 122571 1tazA 365 0.01368 a.211.1.2 106734 1f0jA 377 0.02731 a.211.1.2 19346 2gz4A 207 0.02768 1vj7A 393 0.7957 a.211.1.1,d.218.1.8 100801,100802 3bq3A 270 2.342 1vfgA 390 4.223 a.173.1.1,d.218.1.4 108570,108571 1xfrA 128 4.696 2p71A 132 6.701 a.39.2.1 139516 1miwA 404 7.674 a.173.1.1,d.218.1.4 79162,79163 1so2A 420 9.677 a.211.1.2 98936 1vpdA 299 9.926 a.100.1.1,c.2.1.6 113951,113952 1v0jA 399 12.84 1jdrA 294 18.31 a.93.1.1 62908 1wpnA 188 20.02 c.107.1.1 114826 2q0iA 303 21.03 2pgfA 371 22.11 1dqeA 137 22.49 a.39.2.1 17388 1ls6A 295 24.64 c.37.1.5 91115 2is9A 204 24.90 2o3jA 481 28.51 2akoA 251 28.68 c.73.1.3 126923 3cj1A 456 30.02 2ia4A 287 31.72 1aquA 297 34.18 c.37.1.5 31942 1z7aA 308 34.46 c.6.2.6 124591 1evyA 366 40.87 a.100.1.6,c.2.1.6 18811,30215 1uby 367 43.26 1g3mA 294 43.33 c.37.1.5 83268 2j7nA 1022 43.47 2f94F 350 45.49 1uqwA 509 46.02 c.94.1.1 99799 2hc9A 491 48.18 2e0tA 151 51.99 2cu3A 64 52.90 2afhE 289 54.64 c.37.1.10 126683 2ekcA 262 55.14 1xd8A 289 57.31 1anf 370 60.80 2o7iA 592 62.16 4mbp 370 62.57 1lucB 324 63.03 c.1.16.1 29548 1yv5A 374 63.54 2obbA 142 64.03 1oohA 126 64.58 a.39.2.1 93383 1l6rA 227 68.82 c.108.1.10 77768 1xxsA 122 68.86 2g58A 121 69.25 a.133.1.2 134645 1qksA 567 69.50 a.3.1.2,b.70.2.1 15951,27710 1dseA 292 70.43 a.93.1.1 59130 1zu0A 529 73.13 2i49A 429 73.62 1le6A 123 73.69 a.133.1.2 73862 2fkbA 180 74.41 d.113.1.2 133650 1ax4A 467 74.43 c.67.1.2 34391 1lam 484 74.63 1np3A 338 77.33 a.100.1.2,c.2.1.6 85946,85947 1frb 315 77.70 2zblA 421 77.81 1qbjA 81 79.74 a.4.5.19 16155 1qwvA 142 80.38 a.39.2.1 96506 1ohvA 472 80.70 c.67.1.4 93031 1h16A 759 80.70 c.7.1.1 76462 1vhwA 253 81.22 c.56.2.1 100706 2cc0A 195 81.49 c.6.2.3 130209 1otkA 249 84.82 a.25.1.2 93521 1w8sA 263 86.62 c.1.10.1 120744 1xm9A 457 88.20 a.118.1.24 122142 2c78A 405 88.49 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1j99A 293 88.55 c.37.1.5 71618 1nqkA 381 89.40 c.1.16.4 92050 3bjhA 119 89.57 1gytA 503 89.91 c.50.1.1,c.56.5.3 70765,70766