# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 1.34e-20 3b57A 209 5.36e-18 2pq7A 220 1.98e-15 3ccgA 190 3.96e-13 2o08A 188 5.28e-13 2ogiA 196 3.13e-12 1vqrA 297 6.93e-11 a.211.1.3 114015 2dqbA 376 9.45e-10 2hekA 371 4.52e-09 a.211.1.1 136354 2q14A 410 1.73e-07 2pgsA 451 2.92e-06 3bg2A 444 0.000104 2ousA 331 0.000401 2paqA 201 0.000514 a.211.1.1 139643 1u6zA 513 0.000531 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1xx7A 184 0.000577 a.211.1.1 116143 2parA 201 0.000964 2r8qA 359 0.001355 2hd1A 326 0.001846 a.211.1.2 136338 1ynbA 173 0.001849 a.211.1.1 123718 1zklA 353 0.002358 2ibnA 250 0.002759 a.211.1.4 137195 1yoyA 175 0.003000 a.211.1.1 123795 2ovyA 362 0.003943 1rkpA 326 0.004844 a.211.1.2 97620 1y2kA 349 0.006296 a.211.1.2 122571 1tazA 365 0.006428 a.211.1.2 106734 1tbbA 332 0.006516 a.211.1.2 106741 1tbfA 347 0.007264 a.211.1.2 106743 1z1lA 345 0.007287 1f0jA 377 0.01407 a.211.1.2 19346 2gz4A 207 0.01429 1vj7A 393 0.3239 a.211.1.1,d.218.1.8 100801,100802 3bq3A 270 2.249 1xfrA 128 3.596 1so2A 420 5.038 a.211.1.2 98936 2p71A 132 6.037 a.39.2.1 139516 1vfgA 390 6.100 a.173.1.1,d.218.1.4 108570,108571 1miwA 404 6.671 a.173.1.1,d.218.1.4 79162,79163 1vpdA 299 8.040 a.100.1.1,c.2.1.6 113951,113952 1jdrA 294 17.37 a.93.1.1 62908 1wpnA 188 18.94 c.107.1.1 114826 2o3jA 481 19.08 3cj1A 456 19.13 1z7aA 308 19.29 c.6.2.6 124591 1dqeA 137 19.97 a.39.2.1 17388 2pgfA 371 21.28 2q0iA 303 21.38 1v0jA 399 22.06 1ls6A 295 26.46 c.37.1.5 91115 2is9A 204 28.26 1g3mA 294 32.18 c.37.1.5 83268 1aquA 297 34.52 c.37.1.5 31942 2j7nA 1022 35.19 2ia4A 287 35.44 1uby 367 38.48 4mbp 370 38.95 1anf 370 39.60 1xm9A 457 41.35 a.118.1.24 122142 1evyA 366 42.06 a.100.1.6,c.2.1.6 18811,30215 2akoA 251 42.74 c.73.1.3 126923 1omp 370 45.43 2e0tA 151 45.93 2f94F 350 48.30 2zblA 421 48.82 2ekcA 262 51.55 1lucB 324 57.25 c.1.16.1 29548 2o7iA 592 58.60 1pl8A 356 62.60 b.35.1.2,c.2.1.1 94878,94879 1ax4A 467 63.84 c.67.1.2 34391 2cc0A 195 63.85 c.6.2.3 130209 1frb 315 63.90 1uqwA 509 64.29 c.94.1.1 99799 1nqkA 381 64.30 c.1.16.4 92050 2cu3A 64 64.75 1xxsA 122 65.19 1oohA 126 65.33 a.39.2.1 93383 1yv5A 374 67.53 1lam 484 67.71 2g58A 121 67.91 a.133.1.2 134645 1otkA 249 69.31 a.25.1.2 93521 2hc9A 491 70.51 1j99A 293 70.81 c.37.1.5 71618 1np3A 338 71.45 a.100.1.2,c.2.1.6 85946,85947 2c1gA 431 71.49 c.6.2.3,d.341.1.1 129632,129633 2obbA 142 73.22 1qbjA 81 73.39 a.4.5.19 16155 1zu0A 529 73.85 2afhE 289 76.38 c.37.1.10 126683 2qisA 374 76.75 1dseA 292 77.52 a.93.1.1 59130 2r0bA 154 77.96 1ohvA 472 78.76 c.67.1.4 93031 1qwvA 142 79.07 a.39.2.1 96506 1w8sA 263 80.47 c.1.10.1 120744 1bg6 359 81.00 1snlA 103 81.29 a.39.1.7 105820 1sznA 417 81.64 b.71.1.1,c.1.8.1 106162,106163 1fmjA 351 82.21 c.37.1.5 59879 1h16A 759 82.64 c.7.1.1 76462 1xd8A 289 82.77 1otvA 259 85.00 a.132.1.4 93526 1le6A 123 85.08 a.133.1.2 73862 1dt1A 129 85.83 a.3.1.1 15811 2iw0A 254 88.02 c.6.2.3 137737 1j75A 67 88.39 a.4.5.19 62673 2pgd 482 89.45 1yb4A 295 89.56