# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 7.32e-21 3b57A 209 3.28e-18 2pq7A 220 1.62e-15 3ccgA 190 3.11e-13 2o08A 188 3.99e-13 2ogiA 196 2.36e-12 1vqrA 297 5.43e-11 a.211.1.3 114015 2dqbA 376 1.30e-09 2hekA 371 3.81e-09 a.211.1.1 136354 2q14A 410 1.43e-07 2pgsA 451 2.67e-06 3bg2A 444 7.65e-05 2paqA 201 0.000383 a.211.1.1 139643 2ousA 331 0.000437 1u6zA 513 0.000588 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1xx7A 184 0.000657 a.211.1.1 116143 2parA 201 0.000718 2r8qA 359 0.001389 1ynbA 173 0.001698 a.211.1.1 123718 1zklA 353 0.002170 2ibnA 250 0.002406 a.211.1.4 137195 1yoyA 175 0.002634 a.211.1.1 123795 2hd1A 326 0.002640 a.211.1.2 136338 2ovyA 362 0.004029 1rkpA 326 0.004569 a.211.1.2 97620 1tbbA 332 0.006634 a.211.1.2 106741 1z1lA 345 0.007447 1tbfA 347 0.007625 a.211.1.2 106743 1y2kA 349 0.007986 a.211.1.2 122571 1tazA 365 0.008142 a.211.1.2 106734 2gz4A 207 0.01250 1f0jA 377 0.01513 a.211.1.2 19346 1vj7A 393 0.6373 a.211.1.1,d.218.1.8 100801,100802 3bq3A 270 2.313 1xfrA 128 4.068 2p71A 132 5.092 a.39.2.1 139516 1so2A 420 5.986 a.211.1.2 98936 1vfgA 390 6.193 a.173.1.1,d.218.1.4 108570,108571 1miwA 404 7.821 a.173.1.1,d.218.1.4 79162,79163 1vpdA 299 11.63 a.100.1.1,c.2.1.6 113951,113952 1v0jA 399 11.84 1jdrA 294 14.78 a.93.1.1 62908 1z7aA 308 20.42 c.6.2.6 124591 2q0iA 303 20.76 2pgfA 371 23.07 1wpnA 188 25.33 c.107.1.1 114826 1dqeA 137 26.29 a.39.2.1 17388 2o3jA 481 27.83 3cj1A 456 28.05 2j7nA 1022 28.78 2is9A 204 30.11 1ls6A 295 31.58 c.37.1.5 91115 2ia4A 287 34.29 1aquA 297 36.63 c.37.1.5 31942 1uby 367 36.98 2akoA 251 37.00 c.73.1.3 126923 1g3mA 294 37.21 c.37.1.5 83268 1lucB 324 43.53 c.1.16.1 29548 2hc9A 491 45.73 2f94F 350 47.15 1h16A 759 47.34 c.7.1.1 76462 2ekcA 262 49.82 2e0tA 151 50.12 1evyA 366 51.02 a.100.1.6,c.2.1.6 18811,30215 1xd8A 289 52.75 1lam 484 53.11 2i49A 429 54.44 2pgd 482 56.97 2o7iA 592 59.68 2c78A 405 60.77 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1le6A 123 62.02 a.133.1.2 73862 1yv5A 374 63.16 1xm9A 457 63.58 a.118.1.24 122142 1anf 370 63.69 1dseA 292 64.29 a.93.1.1 59130 2g58A 121 66.46 a.133.1.2 134645 2afhE 289 66.84 c.37.1.10 126683 2cu3A 64 67.06 1xxsA 122 67.17 4mbp 370 68.00 2qisA 374 68.90 1l6rA 227 68.92 c.108.1.10 77768 1mwvA 714 69.87 a.93.1.3,a.93.1.3 85161,85162 1oohA 126 71.05 a.39.2.1 93383 1uqwA 509 71.12 c.94.1.1 99799 1ztcA 221 74.52 d.157.1.11 125635 1bg6 359 74.93 1qwvA 142 76.12 a.39.2.1 96506 1mkrA 294 76.39 a.93.1.1 84997 2obbA 142 76.79 1nqkA 381 77.83 c.1.16.4 92050 2zblA 421 78.17 1sznA 417 79.29 b.71.1.1,c.1.8.1 106162,106163 2c1gA 431 81.13 c.6.2.3,d.341.1.1 129632,129633 2c8vA 288 81.95 c.37.1.10 130128 1omp 370 82.97 1otvA 259 85.97 a.132.1.4 93526 1ohvA 472 86.86 c.67.1.4 93031 1j99A 293 88.62 c.37.1.5 71618 1zu0A 529 88.97