# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 4.58e-19 3b57A 209 4.65e-17 2pq7A 220 1.79e-14 3ccgA 190 2.61e-12 2o08A 188 3.83e-12 2ogiA 196 1.43e-11 1vqrA 297 7.91e-10 a.211.1.3 114015 2dqbA 376 4.91e-09 2hekA 371 1.53e-08 a.211.1.1 136354 2q14A 410 4.32e-07 2pgsA 451 1.80e-05 3bg2A 444 4.08e-05 2paqA 201 0.000395 a.211.1.1 139643 2ousA 331 0.000489 1xx7A 184 0.000934 a.211.1.1 116143 2parA 201 0.001012 1u6zA 513 0.001288 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2ovyA 362 0.002226 2r8qA 359 0.002301 2hd1A 326 0.003034 a.211.1.2 136338 1ynbA 173 0.003605 a.211.1.1 123718 1zklA 353 0.003942 1rkpA 326 0.006478 a.211.1.2 97620 1tbfA 347 0.007393 a.211.1.2 106743 1z1lA 345 0.008152 1tbbA 332 0.009839 a.211.1.2 106741 1yoyA 175 0.01278 a.211.1.1 123795 2ibnA 250 0.01298 a.211.1.4 137195 1tazA 365 0.01416 a.211.1.2 106734 1f0jA 377 0.01489 a.211.1.2 19346 1y2kA 349 0.01491 a.211.1.2 122571 2gz4A 207 0.01556 1vj7A 393 0.1581 a.211.1.1,d.218.1.8 100801,100802 3bq3A 270 2.133 1vfgA 390 4.283 a.173.1.1,d.218.1.4 108570,108571 1xfrA 128 5.083 1miwA 404 6.103 a.173.1.1,d.218.1.4 79162,79163 1so2A 420 8.317 a.211.1.2 98936 2p71A 132 9.510 a.39.2.1 139516 1vpdA 299 12.73 a.100.1.1,c.2.1.6 113951,113952 2pgfA 371 13.93 1v0jA 399 15.23 2e0tA 151 17.82 1dqeA 137 18.49 a.39.2.1 17388 1mwvA 714 21.30 a.93.1.3,a.93.1.3 85161,85162 2r0bA 154 25.14 1g3mA 294 25.14 c.37.1.5 83268 3cj1A 456 26.36 2q0iA 303 34.41 1wpnA 188 37.62 c.107.1.1 114826 1le6A 123 37.95 a.133.1.2 73862 2f4dA 184 41.16 1evyA 366 43.89 a.100.1.6,c.2.1.6 18811,30215 1m3qA 317 44.04 a.96.1.3,d.129.1.2 91184,91185 2is9A 204 44.99 1ls6A 295 45.83 c.37.1.5 91115 1qwvA 142 48.18 a.39.2.1 96506 1aquA 297 48.48 c.37.1.5 31942 1bg6 359 50.71 2f2sA 406 51.31 2c78A 405 51.78 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1z7aA 308 52.03 c.6.2.6 124591 2ifuA 307 54.63 2j7nA 1022 55.48 2i49A 429 56.69 2de3A 365 56.94 1qksA 567 57.27 a.3.1.2,b.70.2.1 15951,27710 2c12A 439 58.43 a.29.3.1,e.6.1.1 129616,129617 1jdrA 294 63.02 a.93.1.1 62908 1lam 484 64.48 1dliA 402 65.78 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zp2A 235 65.83 2akoA 251 66.58 c.73.1.3 126923 1xxsA 122 69.19 1ae7A 119 71.07 a.133.1.2 19553 1rxwA 336 71.80 a.60.7.1,c.120.1.2 98059,98060 2cu3A 64 72.27 1w8sA 263 72.43 c.1.10.1 120744 1qgrA 876 73.23 a.118.1.1 19119 1l6rA 227 75.59 c.108.1.10 77768 1j99A 293 78.52 c.37.1.5 71618 1xm9A 457 80.12 a.118.1.24 122142 2g58A 121 80.38 a.133.1.2 134645 2obbA 142 80.93 1h16A 759 81.77 c.7.1.1 76462 1ez4A 318 82.06 c.2.1.5,d.162.1.1 64917,64918 1ldg 316 85.29 3bnjA 485 85.64 1n3bA 216 86.88 c.37.1.1 79959 2cstA 411 87.93 c.67.1.1 34273 2nt2A 145 88.91 3bjhA 119 88.93 1otkA 249 89.25 a.25.1.2 93521