# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qgsA	225	2.03e-22		
3b57A	209	4.71e-20		
2pq7A	220	7.85e-17		
3ccgA	190	2.00e-14		
2o08A	188	6.78e-14		
2ogiA	196	2.23e-13		
1vqrA	297	2.32e-11	a.211.1.3	114015
2dqbA	376	4.81e-10		
2hekA	371	7.71e-10	a.211.1.1	136354
2q14A	410	2.53e-08		
2pgsA	451	1.35e-06		
3bg2A	444	2.05e-05		
2ousA	331	0.000166		
2paqA	201	0.000189	a.211.1.1	139643
2r8qA	359	0.000381		
1xx7A	184	0.000428	a.211.1.1	116143
2parA	201	0.000507		
1u6zA	513	0.000520	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
1ynbA	173	0.000955	a.211.1.1	123718
1zklA	353	0.001480		
2ovyA	362	0.001532		
1tazA	365	0.001592	a.211.1.2	106734
2ibnA	250	0.001783	a.211.1.4	137195
2hd1A	326	0.001797	a.211.1.2	136338
1z1lA	345	0.002014		
1rkpA	326	0.002300	a.211.1.2	97620
1yoyA	175	0.002585	a.211.1.1	123795
1tbfA	347	0.002596	a.211.1.2	106743
1tbbA	332	0.003405	a.211.1.2	106741
1y2kA	349	0.004059	a.211.1.2	122571
2gz4A	207	0.005572		
1f0jA	377	0.006684	a.211.1.2	19346
1vj7A	393	0.2939	a.211.1.1,d.218.1.8	100801,100802
3bq3A	270	0.9874		
1vfgA	390	1.851	a.173.1.1,d.218.1.4	108570,108571
1xfrA	128	4.445		
1so2A	420	5.217	a.211.1.2	98936
1v0jA	399	5.798		
1miwA	404	6.733	a.173.1.1,d.218.1.4	79162,79163
2p71A	132	7.605	a.39.2.1	139516
1jdrA	294	17.30	a.93.1.1	62908
2q0iA	303	18.59		
3cj1A	456	25.60		
1vpdA	299	28.53	a.100.1.1,c.2.1.6	113951,113952
1g3mA	294	28.71	c.37.1.5	83268
2e0tA	151	29.48		
2akoA	251	29.79	c.73.1.3	126923
2pgfA	371	30.91		
2i49A	429	36.43		
1dqeA	137	38.14	a.39.2.1	17388
1ls6A	295	39.78	c.37.1.5	91115
1aquA	297	40.29	c.37.1.5	31942
2cc0A	195	41.26	c.6.2.3	130209
1xm9A	457	42.73	a.118.1.24	122142
2j7nA	1022	43.24		
1dseA	292	46.51	a.93.1.1	59130
1z7aA	308	48.18	c.6.2.6	124591
1dt1A	129	48.60	a.3.1.1	15811
2cu3A	64	48.86		
1ax4A	467	50.29	c.67.1.2	34391
2ia4A	287	51.68		
1yi8A	351	53.16		
2is9A	204	57.11		
1lw3A	657	58.34	b.55.1.8,c.45.1.3	91152,91153
1qksA	567	58.70	a.3.1.2,b.70.2.1	15951,27710
2r0bA	154	58.77		
1sa3A	262	59.15	c.52.1.23	105400
1mkrA	294	61.40	a.93.1.1	84997
1mwvA	714	64.97	a.93.1.3,a.93.1.3	85161,85162
1lucB	324	65.78	c.1.16.1	29548
2o3jA	481	65.94		
1l6rA	227	66.01	c.108.1.10	77768
3b9cA	144	68.08		
1uby	367	71.50		
2f4dA	184	78.84		
1evyA	366	79.91	a.100.1.6,c.2.1.6	18811,30215
1c52	131	80.99		
1uqwA	509	83.56	c.94.1.1	99799
1le6A	123	84.04	a.133.1.2	73862
1lam	484	85.34		
1p9eA	331	87.35	d.157.1.5	104088
1ldg	316	87.55		
1ztcA	221	88.04	d.157.1.11	125635
1n3bA	216	88.23	c.37.1.1	79959
1m3qA	317	88.62	a.96.1.3,d.129.1.2	91184,91185
1h16A	759	88.81	c.7.1.1	76462
2f2sA	406	89.62