# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qgsA 225 7.82e-25 3b57A 209 9.05e-22 2pq7A 220 1.73e-18 2o08A 188 6.19e-15 3ccgA 190 7.56e-15 2ogiA 196 3.22e-14 1vqrA 297 1.28e-12 a.211.1.3 114015 2hekA 371 5.34e-10 a.211.1.1 136354 2dqbA 376 1.15e-09 2q14A 410 7.26e-08 2pgsA 451 1.43e-05 3bg2A 444 2.58e-05 2ousA 331 0.000116 2parA 201 0.000121 1xx7A 184 0.000122 a.211.1.1 116143 2r8qA 359 0.000126 2ovyA 362 0.000292 1zklA 353 0.000364 2hd1A 326 0.000386 a.211.1.2 136338 2paqA 201 0.000433 a.211.1.1 139643 1ynbA 173 0.000715 a.211.1.1 123718 1u6zA 513 0.002299 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1tbbA 332 0.002660 a.211.1.2 106741 1rkpA 326 0.002768 a.211.1.2 97620 1tbfA 347 0.002906 a.211.1.2 106743 1z1lA 345 0.003085 1f0jA 377 0.003894 a.211.1.2 19346 1y2kA 349 0.004294 a.211.1.2 122571 1yoyA 175 0.005519 a.211.1.1 123795 2ibnA 250 0.006486 a.211.1.4 137195 1tazA 365 0.006894 a.211.1.2 106734 2gz4A 207 0.008569 1vj7A 393 0.1033 a.211.1.1,d.218.1.8 100801,100802 1so2A 420 1.479 a.211.1.2 98936 1vfgA 390 4.638 a.173.1.1,d.218.1.4 108570,108571 3bq3A 270 5.739 2ajtA 500 8.087 b.43.2.2,c.85.1.2 126894,126895 1v0jA 399 12.04 2q0iA 303 12.09 1xfrA 128 12.88 2afhE 289 14.98 c.37.1.10 126683 1yi8A 351 15.00 1wpnA 188 16.04 c.107.1.1 114826 1miwA 404 18.61 a.173.1.1,d.218.1.4 79162,79163 1jdrA 294 23.08 a.93.1.1 62908 1j3bA 529 25.19 c.91.1.1,c.109.1.1 77071,77072 2is9A 204 25.96 1aq0A 306 27.10 c.1.8.3 28842 2p71A 132 33.74 a.39.2.1 139516 1dqeA 137 36.44 a.39.2.1 17388 1uby 367 36.54 1xd8A 289 36.65 2dkfA 431 40.64 2hayA 224 41.89 2c8vA 288 42.46 c.37.1.10 130128 1eudB 396 42.83 c.23.4.1,d.142.1.4 31150,41571 1xwyA 264 48.62 c.1.9.12 122411 1zud2 66 49.39 2fkbA 180 50.44 d.113.1.2 133650 2ia4A 287 51.06 1qksA 567 51.32 a.3.1.2,b.70.2.1 15951,27710 1h16A 759 53.31 c.7.1.1 76462 3cj1A 456 53.43 2oyrA 258 53.45 2qisA 374 56.69 1dt1A 129 62.20 a.3.1.1 15811 2b1xA 470 63.83 b.33.1.2,d.129.3.3 127675,127676 2p3wA 112 64.89 2c78A 405 65.04 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2bkhA 814 65.80 2hxoA 237 68.59 2gpyA 233 69.35 1uteA 313 73.13 d.159.1.1 42078 1j3mA 129 74.05 d.129.7.1 103836 2f4wA 187 78.81 d.20.1.1 132958 3ca8A 266 78.83 1mkrA 294 79.23 a.93.1.1 84997 2i49A 429 79.72 2j66A 428 81.78 1ohvA 472 82.10 c.67.1.4 93031 1tujA 123 86.05 1ztcA 221 86.32 d.157.1.11 125635 1p9eA 331 87.42 d.157.1.5 104088 2yvlA 248 89.61