# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qgsA	225	8.24e-09		
3b57A	209	1.27e-07		
2pq7A	220	3.91e-06		
2o08A	188	0.001232		
3ccgA	190	0.001786		
2ogiA	196	0.002055		
2hd1A	326	0.03080	a.211.1.2	136338
2dqbA	376	0.03799		
2hekA	371	0.07597	a.211.1.1	136354
2r8qA	359	0.1093		
2ovyA	362	0.1145		
1vj7A	393	0.1575	a.211.1.1,d.218.1.8	100801,100802
1tbfA	347	0.2396	a.211.1.2	106743
2ousA	331	0.2697		
1rkpA	326	0.3408	a.211.1.2	97620
1zklA	353	0.3687		
2paqA	201	0.5034	a.211.1.1	139643
1tbbA	332	0.5167	a.211.1.2	106741
1tazA	365	0.5779	a.211.1.2	106734
1vqrA	297	0.6634	a.211.1.3	114015
2pgsA	451	0.6880		
1xx7A	184	0.7078	a.211.1.1	116143
1z1lA	345	0.9075		
1y2kA	349	0.9573	a.211.1.2	122571
3bg2A	444	1.052		
2q14A	410	1.228		
2parA	201	1.448		
1f0jA	377	2.556	a.211.1.2	19346
1ynbA	173	5.664	a.211.1.1	123718
1rqjA	299	6.188	a.128.1.1	97744
1miwA	404	6.330	a.173.1.1,d.218.1.4	79162,79163
1u6zA	513	12.52	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
1so2A	420	15.11	a.211.1.2	98936
2gz4A	207	16.81		
2ivxA	257	18.01		
2r2nA	425	19.36		
1cs0A	1073	21.50	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18558,31487,31673,31674,41518,41519
1rtrA	301	21.68	a.128.1.1	97820
2vchA	480	23.16		
2bkhA	814	23.82		
3c4rA	151	27.80		
1yoyA	175	28.23	a.211.1.1	123795
2q0tA	263	33.09		
1mwvA	714	34.08	a.93.1.3,a.93.1.3	85161,85162
1l1eA	287	36.57	c.66.1.18	73454
1b3uA	588	38.41	a.118.1.2	19135
1b8gA	429	45.03	c.67.1.4	34499
1lvk	762	45.89		
2e1dA	331	46.45		
2ay1A	394	47.67	c.67.1.1	34357
1i2oA	316	52.01	c.1.10.1	61574
1zjcA	418	54.12	e.60.1.1	125147
1p3jA	217	56.76	c.37.1.1,g.41.2.1	94022,94023
1onrA	316	59.74	c.1.10.1	29169
1a9xA	1058	61.87	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
2olrA	540	63.81	c.91.1.1,c.109.1.1	139140,139141
1wdcC	156	65.29	a.39.1.5	17317
2j1pA	293	66.82		
1xngA	268	67.55	c.26.2.1	122186
1gvnB	287	67.83	c.37.1.21	76354
2c1mA	424	69.20		
2j1oA	268	70.38		
1j3bA	529	70.81	c.91.1.1,c.109.1.1	77071,77072
1mw9X	592	71.79	e.10.1.1	91480
3cklA	298	75.12		
2acvA	463	76.28		
1g3mA	294	77.66	c.37.1.5	83268
2jgzB	260	77.92		
2c81A	418	79.43		
2au3A	407	80.54		
2qneA	495	82.10		
1ii2A	524	83.25	c.91.1.1,c.109.1.1	66146,66147
1fmjA	351	86.42	c.37.1.5	59879
1e2kA	331	86.74	c.37.1.1	31854
2f7fA	494	87.64	c.1.17.1,d.41.2.1	133088,133089
2eutA	294	87.75	a.93.1.1	132407
1gvfA	286	88.05	c.1.10.2	70599
2o0rA	411	88.15		
1mvwA	840	89.14	i.15.1.1	79523
2e52A	300	89.23