# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qgsA 210 1.798e-43 3b57A 181 3.532e-32 2pq7A 175 9.161e-24 2ogiA 194 1.803e-09 3ccgA 190 1.118e-05 2o08A 188 1.694e-05 1ynbA 168 2.927e-03 a.211.1.1 123718 2hekA 370 5.900e-02 a.211.1.1 136354 2parA 176 1.135e-01 1b6iA 163 1.496e-01 1l92 d.2.1.3 36945 2dqbA 364 1.624e-01 180lA 163 1.709e-01 1l92 d.2.1.3 36867 1vj7A 327 2.385e-01 a.211.1.1 100801 d.218.1.8 100802 1n57A 280 2.911e-01 c.23.16.2 85328 175lA 163 2.964e-01 1l92 d.2.1.3 36924 1je5A 182 3.555e-01 1je5A b.40.4.7 62909 167lA 165 5.471e-01 1l92 d.2.1.3 36937 1xx7A 173 6.253e-01 a.211.1.1 116143 1lw9A 165 6.639e-01 d.2.1.3 84727 1yoyA 147 6.676e-01 a.211.1.1 123795 2paqA 178 6.858e-01 a.211.1.1 139643 174lA 165 6.933e-01 1l92 d.2.1.3 36956 169lA 163 1.207e+00 1l92 d.2.1.3 36963 176lA 165 1.327e+00 1l92 d.2.1.3 36942 1rf8B 101 1.422e+00 a.210.1.1 97371 137lA 163 1.447e+00 1l92 d.2.1.3 36791 104lA 165 1.574e+00 1l92 d.2.1.3 36969 2q14A 404 1.643e+00 168lA 165 1.738e+00 1l92 d.2.1.3 36975 1g66A 208 1.918e+00 1bs9 c.69.1.30 31329 2cxiA 348 2.329e+00 1p36A 165 3.017e+00 d.2.1.3 93978 1xfsA 155 3.331e+00 d.129.3.5 109589 2anxA 147 3.391e+00 1r53A 288 3.671e+00 d.258.1.1 97063 2c55A 53 3.727e+00 1sx7A 165 3.906e+00 d.2.1.3 112140 2il5A 163 4.811e+00 1xuvA 164 5.170e+00 d.129.3.5 116069 2rhsB 787 5.274e+00 1v74B 88 6.509e+00 a.24.20.1 100443 2j01T 138 6.598e+00 1xszA 357 7.060e+00 a.118.3.1 116005 d.129.9.1 116006 2nszA 130 8.430e+00 a.118.1.14 138560 1kq6A 141 8.514e+00 d.189.1.1 91020 1o7kA 125 8.879e+00 d.189.1.1 81144 2pt0A 314 8.985e+00 1m55A 194 9.022e+00 d.89.1.3 74469 119l 163 9.838e+00 1l92 3bg2A 398 1.140e+01 1bgvA 450 1.171e+01 1k89 c.2.1.7 30217 c.58.1.1 33865 1lbuA 214 1.178e+01 a.20.1.1 16416 d.65.1.1 39549 2qziA 102 1.191e+01 2dsmA 73 1.297e+01 2heqA 85 1.315e+01 1gd5A 131 1.376e+01 1gd5A d.189.1.1 60439 2cl5A 215 1.436e+01 c.66.1.1 130570 3bwyA 215 1.449e+01 3b44A 181 1.492e+01 1tg0A 67 1.569e+01 1ln1A 204 1.694e+01 d.129.3.2 74038 1gtmA 418 1.703e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1wdxA 64 2.058e+01 1hwxA 502 2.249e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1qmhA 335 2.295e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1v38A 79 2.296e+01 a.60.1.2 100280 1hwyA 502 2.365e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 1um0A 366 2.385e+01 d.258.1.1 107942 1k89 450 2.465e+01 1k89 2o0jA 361 2.479e+01 2z08A 124 2.540e+01 1t8tA 269 2.699e+01 c.37.1.5 106685 1wer 325 2.756e+01 1wer 2rc3A 128 2.849e+01 1zupA 294 2.850e+01 c.55.3.11 125681 2fxaA 157 2.914e+01 a.4.5.28 134304 1qbqA 313 2.989e+01 1ft1A a.118.6.1 19187 1gcb 453 3.212e+01 3gcb 1a6dA 504 3.255e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1ar1B 253 3.305e+01 2occB b.6.1.2 23037 f.17.2.1 43619 2avdA 220 3.380e+01 c.66.1.1 127377 1q1lA 337 3.395e+01 d.258.1.1 95591 1lehA 365 3.484e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 3bi7A 195 3.519e+01 2pgsA 394 3.542e+01 2aujD 299 3.581e+01 1eqfA 268 3.585e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1iseA 185 3.682e+01 d.67.3.1 90691 2hjqA 112 3.760e+01 1is1A 186 3.833e+01 d.67.3.1 83704 2epbA 69 3.856e+01