# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3buuA	229	3.565		
1z45A	699	4.577	b.30.5.4,c.2.1.2	124427,124428
1bb8	71	5.671		
1pm1X	180	8.295	b.60.1.1	104189
1v0aA	178	12.65	b.18.1.30	119815
2bw2A	140	14.70		
1b69A	69	15.05	d.10.1.1	37479
1snzA	344	18.39	b.30.5.4	98930
1bhgA	613	19.86	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1p4uA	153	20.47	b.1.10.2	87780
1bb8A	71	22.39	d.10.1.1	37478
1dtgA	334	25.20	c.94.1.2	35896
2rb6A	61	28.45		
3bduA	62	28.92		
1azpA	66	29.73	b.34.13.1	37467
1adwA	123	30.73	b.6.1.1	22893
1bqk	124	32.86		
2ra2A	64	33.64		
1pg6A	243	33.65	b.82.5.2	94673
2v1oA	151	34.78		
1xyiA	66	40.16		
1v7wA	807	43.39	a.102.1.4,b.30.5.3	108411,108412
2a7bA	120	47.97	b.1.10.2	126333
2uurA	245	50.57		
1bdsA	43	50.85	g.9.1.1	44596
2h2zA	306	51.42		
1cj3A	392	56.09	c.3.1.2,d.16.1.2	30347,37878
1yliA	153	56.65	d.38.1.1	123651
1a8e	329	58.63		
1l0qA	391	60.80	b.1.3.1,b.69.2.3	77644,77645
1vkwA	218	62.64	d.90.1.2	108695
1bf4A	63	62.70	b.34.13.1	37461
1c8gA	548	64.65	b.121.5.2	23380
2b6dA	345	66.06	c.94.1.2	127985
1te7A	103	66.09	b.122.1.7	112404
1bnzA	64	66.73	b.34.13.1	37468
1mbmA	198	66.96	b.47.1.3	78916
1lmeA	176	67.69	d.167.1.1	84629
2jn0A	61	68.12		
3bjkA	153	68.27		
1vpmA	169	68.46	d.38.1.1	113967
1y0bA	197	70.54	c.61.1.1	122476
1iu1A	146	73.47	b.1.10.2	71428
2vl6A	268	75.72		
1ryoA	327	77.62	c.94.1.2	98108
1gywA	128	78.70	b.1.10.2	70791
1g6nA	210	79.51	a.4.5.4,b.82.3.2	16100,28139
2fi9A	128	82.51	c.103.1.1	133513
2e63A	170	85.43		
2jfrA	234	87.97		
2glwA	92	88.14