# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	4.197		
1c8cA	64	8.317	b.34.13.1	59084
2bw2A	140	8.726		
1jmoA	480	9.759	e.1.1.1	77138
2jdiH	146	15.26	a.2.10.1,b.93.1.1	138273,138274
2uurA	245	18.35		
1k32A	1045	18.74	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2arrA	382	20.23		
1bb8	71	20.74		
2q2bA	179	22.04		
1jsuC	84	23.97	j.55.1.1	46339
1jmcA	246	26.09	b.40.4.3,b.40.4.3	25300,25301
3bduA	62	26.10		
1t2wA	145	27.30	b.100.1.1	106289
2ra2A	64	28.20		
1uhgA	385	29.44	e.1.1.1	88491
2bvlA	543	30.00		
1jrrA	382	32.36	e.1.1.1	63256
2os5A	119	39.80		
1ijaA	148	42.46	b.100.1.1	62484
2oayA	391	42.63		
1p4uA	153	44.69	b.1.10.2	87780
2pr5A	132	45.09		
1rf6A	427	45.11	d.68.2.2	97366
1yliA	153	45.19	d.38.1.1	123651
1bb8A	71	46.48	d.10.1.1	37478
1vpmA	169	46.75	d.38.1.1	113967
2z1cA	75	47.04		
1yz7A	188	47.75		
1dptA	117	48.18	d.80.1.3	39862
1r5lA	262	49.69	a.5.3.1,c.13.1.1	97099,97100
1uliA	460	50.87	b.33.1.2,d.129.3.3	107921,107922
3bjoA	103	52.27		
1gd0A	122	52.96	d.80.1.3	39834
2eisA	133	53.76		
2gysA	419	54.62	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2gfaA	119	54.67	b.34.9.1,b.34.9.1	135089,135090
2jfrA	234	55.39		
1qveA	126	55.52	d.24.1.1	104594
1d7qA	143	57.63	b.40.4.5	25331
3tssA	194	58.61	b.40.2.2,d.15.6.1	25160,37749
2fwtA	125	58.81		
1jr2A	286	59.55	c.113.1.1	67111
2ux0A	143	60.14		
2jxtA	86	62.61		
2ckfA	454	62.64		
1dzkA	157	64.57	b.60.1.1	27096
2pv4A	145	66.14		
3bjkA	153	67.28		
2cxyA	125	67.74		
2aq6A	147	68.37	b.45.1.1	127156
3c2qA	345	69.09		
1pfo	500	71.44		
2gdgA	114	72.26	d.80.1.3	135015
1cdcA	99	72.50	b.1.1.1	19746
2glwA	92	74.44		
1hfoA	113	79.80	d.80.1.3	61006
1te7A	103	82.16	b.122.1.7	112404
2gjgA	248	84.27		
2imjA	166	85.00		
2b6dA	345	87.31	c.94.1.2	127985
1ucsA	64	87.49	b.85.1.1	88466
1oh0A	131	88.87	d.17.4.3	87004
2h4pA	394	89.96