# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	9.041	b.34.13.1	59084
1xyiA	66	10.98		
1bb8	71	11.73		
1r0uA	148	13.66	b.60.1.5	96741
1p4uA	153	14.23	b.1.10.2	87780
1jmoA	480	20.05	e.1.1.1	77138
2uurA	245	22.38		
1k32A	1045	24.06	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2v78A	313	26.79		
2erfA	209	29.56	b.29.1.4	132287
2bmaA	470	29.92		
1bb8A	71	30.91	d.10.1.1	37478
2aq6A	147	33.74	b.45.1.1	127156
1dzkA	157	34.64	b.60.1.1	27096
1jmcA	246	35.00	b.40.4.3,b.40.4.3	25300,25301
2z1cA	75	35.13		
1jsuC	84	39.07	j.55.1.1	46339
2bw2A	140	41.92		
3bduA	62	42.90		
1q2bA	434	45.07	b.29.1.10	95624
1jr2A	286	46.35	c.113.1.1	67111
2q2bA	179	46.89		
2joeA	139	50.39		
2gysA	419	51.08	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2j01Z	206	51.74		
1jlyA	304	52.64	b.42.3.1,b.42.3.1	25587,25588
2eisA	133	53.98		
1rf6A	427	54.65	d.68.2.2	97366
2qm0A	275	56.70		
2cxyA	125	61.25		
1ucsA	64	61.99	b.85.1.1	88466
1feuA	206	62.21	b.53.1.1	59801
1t2wA	145	63.99	b.100.1.1	106289
1hg7A	66	64.29	b.85.1.1	28280
3cp3A	148	64.82		
2glwA	92	66.42		
2pr5A	132	66.68		
1te7A	103	68.61	b.122.1.7	112404
2pqcA	445	69.18		
3c2qA	345	69.43		
1qveA	126	71.07	d.24.1.1	104594
2b1xA	470	74.13	b.33.1.2,d.129.3.3	127675,127676
2jdiH	146	75.12	a.2.10.1,b.93.1.1	138273,138274
2fwtA	125	76.50		
1r5lA	262	81.12	a.5.3.1,c.13.1.1	97099,97100
3bjoA	103	81.58		
2vgfA	528	81.59		
1vpmA	169	83.16	d.38.1.1	113967
2gfaA	119	83.31	b.34.9.1,b.34.9.1	135089,135090
1j58A	385	84.21	b.82.1.2	71531
1wkbA	810	84.21		
2ra2A	64	85.21		
2jxtA	86	85.91		
2arrA	382	86.07		
1jrrA	382	87.68	e.1.1.1	63256