# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	14.60		
1c8cA	64	18.35	b.34.13.1	59084
1bb8	71	21.25		
1q2bA	434	23.18	b.29.1.10	95624
1jmoA	480	29.94	e.1.1.1	77138
2v78A	313	29.97		
2bw2A	140	31.48		
1p4uA	153	31.70	b.1.10.2	87780
1r0uA	148	34.96	b.60.1.5	96741
1feuA	206	37.61	b.53.1.1	59801
2erfA	209	41.13	b.29.1.4	132287
1jlyA	304	43.02	b.42.3.1,b.42.3.1	25587,25588
2z1cA	75	43.24		
1dzkA	157	43.95	b.60.1.1	27096
2b7uA	257	44.11		
2aq6A	147	46.85	b.45.1.1	127156
2bmaA	470	47.11		
1jsuC	84	51.93	j.55.1.1	46339
2j01Z	206	53.81		
2jdiH	146	55.04	a.2.10.1,b.93.1.1	138273,138274
1bb8A	71	55.26	d.10.1.1	37478
2gysA	419	56.38	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1jmcA	246	56.57	b.40.4.3,b.40.4.3	25300,25301
1k32A	1045	57.89	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2qm0A	275	66.80		
2uurA	245	67.76		
2q2bA	179	67.76		
2isbA	192	70.62	c.8.9.1	137601
1te7A	103	72.98	b.122.1.7	112404
3ba3A	145	73.36		
2eisA	133	74.28		
1t2wA	145	76.08	b.100.1.1	106289
2arrA	382	77.11		
1r5lA	262	81.51	a.5.3.1,c.13.1.1	97099,97100
1qveA	126	82.41	d.24.1.1	104594
1rljA	139	83.53	c.23.5.7	104983
2bvlA	543	83.90		
2ak3A	226	85.82	c.37.1.1,g.41.2.1	31892,45193
1wspA	84	86.03		
1ucsA	64	86.05	b.85.1.1	88466
1t6aA	126	87.29	d.129.8.1	106555
1yreA	197	89.95	d.108.1.1	123919