# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	11.77		
2v78A	313	15.67		
2uurA	245	22.34		
1r0uA	148	22.86	b.60.1.5	96741
1c8cA	64	26.48	b.34.13.1	59084
2bw2A	140	26.82		
1r5lA	262	28.54	a.5.3.1,c.13.1.1	97099,97100
2erfA	209	34.39	b.29.1.4	132287
1bb8	71	35.43		
2eisA	133	40.40		
2z1cA	75	40.84		
1p4uA	153	42.64	b.1.10.2	87780
1yz7A	188	44.18		
1jmcA	246	45.40	b.40.4.3,b.40.4.3	25300,25301
2bmaA	470	46.20		
3bduA	62	49.57		
1jsuC	84	51.24	j.55.1.1	46339
1te7A	103	56.95	b.122.1.7	112404
2q2bA	179	61.39		
2bvlA	543	61.93		
1ucsA	64	62.69	b.85.1.1	88466
1t2wA	145	63.59	b.100.1.1	106289
2ra2A	64	65.82		
2sak	121	70.77		
2sakA	121	70.77	d.15.5.1	37711
2gysA	419	70.89	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1yliA	153	72.21	d.38.1.1	123651
1hg7A	66	75.46	b.85.1.1	28280
2jdiH	146	75.94	a.2.10.1,b.93.1.1	138273,138274
2ak3A	226	76.36	c.37.1.1,g.41.2.1	31892,45193
1jmoA	480	77.28	e.1.1.1	77138
1jr2A	286	78.34	c.113.1.1	67111
1bb8A	71	78.45	d.10.1.1	37478
1k32A	1045	84.75	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1q2bA	434	84.83	b.29.1.10	95624
1dzkA	157	86.42	b.60.1.1	27096
1uliA	460	88.36	b.33.1.2,d.129.3.3	107921,107922
1vpmA	169	88.87	d.38.1.1	113967
2os5A	119	89.08		
1x82A	190	89.75	b.82.1.7	114955