# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	4.373		
1azpA	66	7.557	b.34.13.1	37467
1cfb	205	9.474		
1c8cA	64	9.764	b.34.13.1	59084
1xyiA	66	11.47		
2j1vA	151	14.97		
3tssA	194	18.13	b.40.2.2,d.15.6.1	25160,37749
2yqcA	486	20.43		
1bb8A	71	21.75	d.10.1.1	37478
1qw9A	502	23.17	b.71.1.2,c.1.8.3	96466,96467
2a1vA	144	24.65	d.198.3.1	126019
1cdcA	99	25.24	b.1.1.1	19746
2jdiH	146	26.71	a.2.10.1,b.93.1.1	138273,138274
1i7qB	193	30.96	c.23.16.1	61902
1te7A	103	33.50	b.122.1.7	112404
2jfrA	234	33.83		
2por	301	34.91		
2d5lA	706	36.01		
1jrrA	382	36.02	e.1.1.1	63256
2z1cA	75	36.69		
1uhgA	385	39.46	e.1.1.1	88491
2e9yA	316	40.47		
1tupA	219	42.01	b.2.5.2	22434
1d7qA	143	42.53	b.40.4.5	25331
1iu1A	146	43.08	b.1.10.2	71428
3bwlA	126	47.52		
3buuA	229	48.44		
2e5yA	133	48.87		
2r78A	117	49.58		
1aw7A	194	50.16	b.40.2.2,d.15.6.1	25164,37753
1jpkA	388	52.26	c.1.22.1	67026
2uurA	245	52.71		
2j22A	148	54.12		
2h41A	95	54.21		
1rf6A	427	55.23	d.68.2.2	97366
1zq1A	438	55.97	b.38.3.1,c.88.1.1	125489,125490
1td4A	115	57.42	b.85.2.1	112389
2j82A	240	60.07		
1v3yA	192	61.33	d.167.1.1	113508
4tsvA	150	61.61	b.22.1.1	23860
2bw2A	140	63.62		
2cxyA	125	67.44		
1fepA	724	68.63	f.4.3.3	43808
1wocA	103	69.35		
1ayfA	105	71.39	d.15.4.1	37684
2pqcA	445	72.57		
2fwtA	125	73.70		
2q7eA	291	75.32		
3byvA	377	75.75		
2inbA	140	77.65		
2sakA	121	79.87	d.15.5.1	37711
2os5A	119	80.08		
1lmeA	176	81.95	d.167.1.1	84629
1kqqA	139	81.97	a.4.3.1	72885
2glwA	92	82.10		
2ra2A	64	85.80		
2db9A	149	85.84		
1jmoA	480	87.59	e.1.1.1	77138