# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cfb	205	5.847		
2j1vA	151	6.100		
1azpA	66	7.613	b.34.13.1	37467
1xyiA	66	9.367		
1bb8	71	9.96		
2d5lA	706	12.54		
1c8cA	64	15.08	b.34.13.1	59084
1te7A	103	17.52	b.122.1.7	112404
1tupA	219	18.60	b.2.5.2	22434
3bwlA	126	21.44		
1qw9A	502	25.04	b.71.1.2,c.1.8.3	96466,96467
2r78A	117	29.39		
1iu1A	146	34.92	b.1.10.2	71428
2z1cA	75	35.61		
1wocA	103	36.33		
2yqcA	486	38.73		
3tssA	194	40.53	b.40.2.2,d.15.6.1	25160,37749
1i7qB	193	40.76	c.23.16.1	61902
1d7qA	143	41.04	b.40.4.5	25331
1cdcA	99	41.99	b.1.1.1	19746
2bw2A	140	43.20		
2por	301	43.90		
1bb8A	71	44.45	d.10.1.1	37478
1ayfA	105	47.18	d.15.4.1	37684
1jpkA	388	50.20	c.1.22.1	67026
2a1vA	144	53.83	d.198.3.1	126019
1fepA	724	54.86	f.4.3.3	43808
2e5yA	133	55.25		
1gyvA	120	56.45	b.1.10.2	70790
1rf6A	427	58.13	d.68.2.2	97366
2h41A	95	60.00		
1pfo	500	62.87		
3bduA	62	63.00		
2pqcA	445	63.28		
3cp3A	148	63.57		
1ucsA	64	63.70	b.85.1.1	88466
1hg7A	66	64.88	b.85.1.1	28280
1td4A	115	65.33	b.85.2.1	112389
1q38A	89	65.87	b.1.2.1	95663
2glwA	92	66.78		
1pfoA	500	68.24	f.9.1.1	43826
1pea	385	68.31		
2jxtA	86	69.18		
2i5nH	258	70.51	b.41.1.1,f.23.10.1	137064,137065
1q15A	503	71.35	c.26.2.1,d.153.1.1	95538,95539
2ra2A	64	72.98		
2sakA	121	74.01	d.15.5.1	37711
1jlyA	304	74.09	b.42.3.1,b.42.3.1	25587,25588
4tsvA	150	75.81	b.22.1.1	23860
1wi5A	119	76.45	b.40.4.5	114661
2os5A	119	77.14		
1jsuC	84	78.61	j.55.1.1	46339
1a8d	452	80.19		
3byvA	377	80.31		
2j22A	148	81.02		
1v3yA	192	82.58	d.167.1.1	113508
1aw7A	194	83.09	b.40.2.2,d.15.6.1	25164,37753
2gg6A	455	83.32		
2fwtA	125	83.60		
1jrrA	382	83.86	e.1.1.1	63256
3bjoA	103	85.20		
2rb6A	61	85.53		
2e9yA	316	88.74		
2gfaA	119	89.24	b.34.9.1,b.34.9.1	135089,135090