# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	8.596		
1cfb	205	12.59		
2e9yA	316	14.43		
1aw7A	194	15.60	b.40.2.2,d.15.6.1	25164,37753
1azpA	66	18.21	b.34.13.1	37467
3tssA	194	23.03	b.40.2.2,d.15.6.1	25160,37749
2a1vA	144	25.73	d.198.3.1	126019
1td4A	115	25.73	b.85.2.1	112389
1xyiA	66	25.77		
2q7eA	291	27.60		
1te7A	103	27.79	b.122.1.7	112404
3buuA	229	30.99		
1qgxA	357	32.76	e.7.1.1	42973
2j1vA	151	34.71		
1iu1A	146	35.56	b.1.10.2	71428
1c8cA	64	40.29	b.34.13.1	59084
3byvA	377	41.38		
1cdcA	99	42.69	b.1.1.1	19746
1phkA	298	42.94	d.144.1.7	41635
1rf6A	427	43.36	d.68.2.2	97366
2bw2A	140	45.77		
1bb8A	71	46.24	d.10.1.1	37478
2sakA	121	46.75	d.15.5.1	37711
1i7qB	193	48.77	c.23.16.1	61902
2erfA	209	49.11	b.29.1.4	132287
2yqcA	486	50.56		
2pqcA	445	52.25		
3bwlA	126	53.19		
2z1cA	75	53.92		
1gyvA	120	55.66	b.1.10.2	70790
1wcqA	601	60.84	b.1.18.2,b.18.1.1,b.68.1.1	120894,120895,120896
1hg7A	66	65.21	b.85.1.1	28280
2inbA	140	66.31		
3cp3A	148	66.76		
1v3yA	192	67.06	d.167.1.1	113508
1ka1A	357	69.16	e.7.1.1	68369
3bjoA	103	69.61		
3bduA	62	70.07		
1ucsA	64	71.47	b.85.1.1	88466
2jfrA	234	72.32		
2h41A	95	74.30		
3cokA	278	74.75		
2ra2A	64	75.24		
2ux0A	143	77.18		
2gg6A	455	77.62		
2bc3A	159	78.11	b.61.1.1	128279
2uurA	245	78.35		
1jsuC	84	78.58	j.55.1.1	46339
2d5lA	706	78.80		
2r78A	117	79.46		
1ayfA	105	80.70	d.15.4.1	37684
2eisA	133	81.31		
1q15A	503	83.23	c.26.2.1,d.153.1.1	95538,95539
1tl2A	236	83.45	b.67.1.1	27541
2glwA	92	84.98		
2fwtA	125	87.19		
1tupA	219	87.26	b.2.5.2	22434