Best Alignments for T0467

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1azpA/T0467-1azpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1azpA/T0467-1azpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8930e-016.84e-11 1azpA b.34.13.1
2fxqA/T0467-2fxqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fxqA/T0467-2fxqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9126e-017.73e-12
1xyiA/T0467-1xyiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xyiA/T0467-1xyiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1821e+009.81e-11
2z1cA/T0467-2z1cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2z1cA/T0467-2z1cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8677e+002.84e-08
2q8oA/T0467-2q8oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2q8oA/T0467-2q8oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2118e+001.30e-06
2gfaA/T0467-2gfaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfaA/T0467-2gfaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8888e+001.36e-12 b.34.9.1
b.34.9.1
2rb6A/T0467-2rb6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rb6A/T0467-2rb6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5802e+007.46e-06
2ra2A/T0467-2ra2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ra2A/T0467-2ra2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6225e+009.78e-06
2qqrA/T0467-2qqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qqrA/T0467-2qqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2010e+001.60e-11
1i40A/T0467-1i40A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i40A/T0467-1i40A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1361e+001.02e-07 b.40.5.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001