# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c8cA 64 1.97e-02 1azpA b.34.13.1 59084 1bnzA 64 5.59e-02 1azpA b.34.13.1 37468 1bf4A 63 6.08e-02 1azpA b.34.13.1 37461 1azpA 66 8.64e-02 1azpA b.34.13.1 37467 1bbxC 63 9.30e-02 1azpA b.34.13.1 37465 1xyiA 66 1.26e-01 3bjkA 153 5.46e-01 1yliA 153 9.55e-01 d.38.1.1 123651 1qfhA 212 1.18e+00 1qfhA b.1.18.10,b.1.18.10 21893,21894 2h27A 73 1.90e+00 a.4.13.2 135993 2h61A 92 1.98e+00 a.39.1.2 136169 2rb6A 61 2.33e+00 2fnjC 96 2.48e+00 d.42.1.1 133820 1vdmA 153 3.09e+00 c.61.1.1 119994 1dkxA 219 3.69e+00 1dkzA a.8.4.1,b.130.1.1 90339,90340 1b4cA 92 3.76e+00 1b4cA a.39.1.2 17169 1vpmA 169 4.15e+00 d.38.1.1 113967 1lm8C 96 4.31e+00 d.42.1.1 74034 1qg3A 195 4.50e+00 1qg3A b.1.2.1,b.1.2.1 21993,21994 1dkzA 219 4.82e+00 1dkzA a.8.4.1,b.130.1.1 90345,90346 1wwbX 103 4.93e+00 1wwcA b.1.1.4 21777 2ra2A 64 5.25e+00 2z1cA 75 6.09e+00 1lqyA 184 6.16e+00 d.167.1.1 74212 1zxzA 197 6.38e+00 2qcuA 501 6.43e+00 2fxqA 264 6.53e+00 1vcbB 112 6.70e+00 1vcbB d.42.1.1 38633 2eisA 133 7.43e+00 1or7A 194 8.03e+00 a.4.13.2,a.177.1.1 87332,87333 2cu9A 161 1.01e+01 1lm6A 215 1.03e+01 d.167.1.1 84628 3bduA 62 1.18e+01 1zt2B 212 1.24e+01 a.262.1.1 125625 2ijrA 300 1.26e+01 2gu9A 113 1.27e+01 2f68X 313 1.27e+01 1nb8A 353 1.29e+01 d.3.1.9 80385 2gf6A 135 1.40e+01 d.38.1.1 135077 1bqk 124 1.45e+01 1bqk 1f42A 306 1.48e+01 1f42A b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2aieP 203 1.58e+01 2gy5A 423 1.66e+01 1b69A 69 1.69e+01 2bb8 d.10.1.1 37479 2dt8A 280 1.73e+01 1ibzA 112 1.80e+01 1ibzA b.6.1.4 62237 1wgrA 100 1.81e+01 d.15.1.5 114621 1v93A 296 1.82e+01 c.1.23.1 100532 2ftbA 125 1.82e+01 b.60.1.2 134057 1rocA 155 1.84e+01 b.1.22.1 97673 1oi0A 124 1.93e+01 c.97.3.1 93045 1bqkA 124 1.94e+01 b.6.1.1 22889 1ckaA 57 1.99e+01 1ckaA b.34.2.1 24459 1hkqA 132 2.00e+01 a.4.5.10 83555 1cfpA 92 2.01e+01 1b4cA a.39.1.2 17172 1ibyA 112 2.09e+01 1ibzA b.6.1.4 62233 1cfbA 205 2.12e+01 b.1.2.1,b.1.2.1 21991,21992 1zg2A 107 2.12e+01 1bb8 71 2.13e+01 2bb8 1bb8A 71 2.13e+01 d.10.1.1 37478 1jq4A 98 2.14e+01 d.15.4.2 67083 1cfb 205 2.16e+01 1cfb 2iwxA 214 2.27e+01 d.122.1.1 137758 1b07A 59 2.35e+01 1ckaA b.34.2.1 24461 1nciA 110 2.39e+01 1edhA b.1.6.1 22191 1g2rA 100 2.43e+01 1g2rA d.192.1.1 60231 1x1gA 129 2.46e+01 b.55.1.1 121580 2o9uX 97 2.49e+01 d.17.1.1 138960 1y7wA 291 2.52e+01 2d8rA 99 2.55e+01 1yy7A 213 2.57e+01 1rreA 200 2.73e+01 d.14.1.10 97791 3buuA 229 2.88e+01 3bmzA 199 2.94e+01 1yurA 98 2.98e+01 a.39.1.2 124062 2g50A 530 3.06e+01 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2breA 219 3.08e+01 d.122.1.1 128994 1je3A 97 3.16e+01 d.68.3.3 71637 2dchX 216 3.16e+01 1jzgA 128 3.19e+01 b.6.1.1 67855 1mbyA 88 3.33e+01 d.223.1.1 78931 3crnA 132 3.43e+01 1dokA 77 3.51e+01 1dokA d.9.1.1 37420 2q9vA 90 3.66e+01 2i5nH 258 3.67e+01 b.41.1.1,f.23.10.1 137064,137065 2egdA 98 3.72e+01 1u2hA 99 3.75e+01 1a49A 530 3.76e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2h36X 112 3.84e+01 1adwA 123 3.90e+01 1bqk b.6.1.1 22893 1a87 321 3.91e+01 1a87 1l2hA 153 4.04e+01 b.42.1.2 77655 1e2wA 251 4.06e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1molA 94 4.08e+01 1molA d.17.1.1 37988 1q7hA 153 4.09e+01 b.122.1.1,d.17.6.2 96042,96043 2okfA 140 4.14e+01 1s5pA 235 4.14e+01 c.31.1.5 98569 2e7zA 727 4.17e+01 1ml0D 76 4.27e+01 d.9.1.1 79254 1ef4A 55 4.34e+01 1ef4A a.4.11.1 16272 1cc3A 130 4.44e+01 1nwpA b.6.1.1 23008 1z7gA 217 4.47e+01 c.61.1.1 124624 2e5eA 101 4.50e+01 1p6pA 125 4.51e+01 b.60.1.2 87839 1op1A 82 4.57e+01 a.13.1.1 93396 2q2bA 179 4.60e+01 2h2kA 106 4.60e+01 2gxaA 274 4.76e+01 2oynA 146 4.77e+01 1xvxA 312 4.77e+01 c.94.1.1 116097 1y0nA 78 4.79e+01 d.291.1.1 116305 1nz0A 118 4.81e+01 d.14.1.2 86433 2a6zA 222 4.97e+01 b.29.1.13 126319 1sg7A 96 5.07e+01 a.239.1.1 118961 1wmhA 89 5.08e+01 d.15.2.2 114744 1jo0A 98 5.18e+01 d.68.4.1 77140 2j01P 150 5.20e+01 2g95A 491 5.39e+01 1h5yA 253 5.42e+01 c.1.2.1 65638 2h6oA 470 5.44e+01 2i1b 153 5.50e+01 2i1b 2qpwA 149 5.51e+01 2as0A 396 5.53e+01 b.122.1.9,c.66.1.51 127227,127228 2nutA 769 5.57e+01 2p5vA 162 5.60e+01 2pfuA 99 5.61e+01 1pcaA 95 5.67e+01 d.58.3.1 39063 1qr4A 186 5.73e+01 1qr4B b.1.2.1,b.1.2.1 21986,21987 1nqzA 194 5.74e+01 d.113.1.1 86077 1pm4A 119 5.94e+01 b.135.1.1 94891 1x3cA 73 5.99e+01 g.37.1.1 121660 1gyhA 318 6.03e+01 b.67.2.1 70757 2q8pA 260 6.04e+01 1dcjA 81 6.06e+01 1dcjA d.68.3.3 59115 1qfjA 232 6.20e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1gifA 115 6.22e+01 1dptA d.80.1.3 39837 1wi0A 113 6.25e+01 d.15.2.2 114657 1vdwA 254 6.31e+01 e.7.1.1 100569 1ur4A 399 6.34e+01 c.1.8.3 113402 2hm2Q 89 6.59e+01 1jsuC 84 6.69e+01 1jsuC j.55.1.1 46339 2prdA 174 6.82e+01 b.40.5.1 25435 1l4zB 136 6.82e+01 d.15.5.1 77704 1wdkC 390 6.88e+01 c.95.1.1,c.95.1.1 109258,109259 2g40A 224 6.95e+01 c.124.1.7 134575 2dkoB 103 6.96e+01 2inbA 140 6.97e+01 1gd0A 122 6.98e+01 1dptA d.80.1.3 39834 1ikoP 178 7.01e+01 b.6.1.5 71243 2por 301 7.06e+01 2por 1whzA 70 7.11e+01 d.50.3.2 114656 1qr4B 186 7.17e+01 1qr4B b.1.2.1,b.1.2.1 21988,21989 2dztA 248 7.19e+01 1lfpA 249 7.26e+01 e.39.1.1 73885 1oxsC 353 7.29e+01 b.40.6.3,c.37.1.12 87519,87520 2gdgA 114 7.36e+01 d.80.1.3 135015 1jdqA 98 7.36e+01 d.68.3.3 66559 2vc8A 84 7.48e+01 1i6uA 130 7.50e+01 d.140.1.1 61850 2bsfA 176 7.66e+01 1j7xA 302 7.70e+01 c.14.1.2 66425 1ou8A 111 7.75e+01 b.136.1.1 93543 2bsaA 303 7.79e+01 b.43.4.2,c.25.1.1 129078,129079 1ag0A 129 7.80e+01 1nwpA b.6.1.1 23001 1tmcA 175 7.80e+01 1agdA d.19.1.1 38258 1i4uA 181 7.81e+01 b.60.1.1 61732 1jmmA 377 7.83e+01 b.30.6.1 71749 1e69B 322 7.86e+01 1e69B c.37.1.12 32377 2ft6A 124 7.90e+01 1konA 249 7.96e+01 e.39.1.1 72823