# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ywxA 102 1.66e-01 d.12.1.3 124165 1c8cA 64 2.66e-01 1azpA b.34.13.1 59084 1bbxC 63 3.42e-01 1azpA b.34.13.1 37465 1bf4A 63 4.67e-01 1azpA b.34.13.1 37461 1yliA 153 4.81e-01 d.38.1.1 123651 1bnzA 64 7.00e-01 1azpA b.34.13.1 37468 1azpA 66 8.66e-01 1azpA b.34.13.1 37467 1b4cA 92 9.85e-01 1b4cA a.39.1.2 17169 1xyiA 66 1.02e+00 3bjkA 153 1.28e+00 1b69A 69 1.89e+00 2bb8 d.10.1.1 37479 1bccE 196 2.99e+00 1rie b.33.1.1,f.23.12.1 24431,43699 2oemA 413 3.09e+00 1je3A 97 3.54e+00 d.68.3.3 71637 2ra2A 64 4.61e+00 1j7xA 302 4.68e+00 c.14.1.2 66425 1bb8 71 4.76e+00 2bb8 1bb8A 71 4.76e+00 d.10.1.1 37478 1cfpA 92 5.22e+00 1b4cA a.39.1.2 17172 3craA 265 5.42e+00 3bduA 62 5.46e+00 1qfhA 212 5.78e+00 1qfhA b.1.18.10,b.1.18.10 21893,21894 2h61A 92 6.52e+00 a.39.1.2 136169 2z1cA 75 6.97e+00 1or7A 194 7.59e+00 a.4.13.2,a.177.1.1 87332,87333 1vdmA 153 8.31e+00 c.61.1.1 119994 2rb6A 61 9.00e+00 1jsuC 84 9.31e+00 1jsuC j.55.1.1 46339 2dvyA 226 1.02e+01 1zdrA 164 1.12e+01 2h27A 73 1.14e+01 a.4.13.2 135993 2dhzA 120 1.15e+01 2vc8A 84 1.15e+01 2hqlA 110 1.28e+01 1mr1C 99 1.31e+01 d.217.1.2 79420 1w85A 368 1.42e+01 c.36.1.11 114335 1hwtC 81 1.55e+01 1hwtC g.38.1.1,h.1.3.1 45085,45518 3bjaA 139 1.58e+01 1dkzA 219 1.71e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1h75A 81 1.84e+01 1h75A c.47.1.1 60716 1wrjA 156 1.87e+01 1v98A 140 1.88e+01 1vpmA 169 1.93e+01 d.38.1.1 113967 1z06A 189 1.97e+01 c.37.1.8 124301 1r8mE 203 2.09e+01 a.118.3.1 97242 1zg2A 107 2.19e+01 1tfe 145 2.23e+01 1tfe 1tfeA 145 2.23e+01 d.43.1.1 38680 2vnfA 60 2.23e+01 2j6gA 266 2.27e+01 1dkxA 219 2.28e+01 1dkzA a.8.4.1,b.130.1.1 90339,90340 1k6zA 141 2.42e+01 d.198.1.1 68247 2ciuA 127 2.48e+01 1l2hA 153 2.53e+01 b.42.1.2 77655 1snlA 103 2.62e+01 a.39.1.7 105820 1jyaA 130 2.62e+01 d.198.1.1 67453 2q9vA 90 2.64e+01 2nyxA 168 2.76e+01 2vafA 378 2.76e+01 1sjiA 350 2.93e+01 1nqzA 194 2.98e+01 d.113.1.1 86077 2ga1A 106 3.01e+01 a.4.1.16 134850 2o3lA 85 3.02e+01 1wj2A 78 3.24e+01 g.79.1.1 114689 1shsA 147 3.26e+01 1shsA b.15.1.1 23675 2ia0A 171 3.26e+01 2heoA 67 3.34e+01 1y7wA 291 3.45e+01 2j2zB 173 3.54e+01 2yz0A 138 3.58e+01 1sxvA 172 3.60e+01 1iq3A 110 3.60e+01 1iq3A a.39.1.6 62640 2por 301 3.67e+01 2por 2porA 301 3.67e+01 f.4.3.1 43759 2nr7A 195 3.72e+01 2gf6A 135 3.74e+01 d.38.1.1 135077 1uh6A 100 3.80e+01 d.15.1.1 99394 2fxqA 264 3.82e+01 1xqiA 195 3.92e+01 d.58.6.1 122237 2yzjA 169 3.96e+01 2d8rA 99 4.00e+01 2pfuA 99 4.05e+01 1jo0A 98 4.08e+01 d.68.4.1 77140 2p9rA 102 4.09e+01 1zt2B 212 4.30e+01 a.262.1.1 125625 1hkqA 132 4.31e+01 a.4.5.10 83555 2osaA 202 4.34e+01 1aonO 97 4.47e+01 b.35.1.1 24642 1shxA 138 4.51e+01 b.6.1.5 118962 2eisA 133 4.59e+01 1v66A 65 4.61e+01 a.140.2.1 113543 1x4tA 92 4.85e+01 a.2.15.1 121698 1wgrA 100 4.94e+01 d.15.1.5 114621 1lqyA 184 4.98e+01 d.167.1.1 74212 2gu9A 113 4.99e+01 1wmhA 89 5.00e+01 d.15.2.2 114744 1qjtA 99 5.01e+01 1eh2 a.39.1.6 17335 1ppjE 196 5.10e+01 b.33.1.1,f.23.12.1 104260,104261 1aipC 196 5.15e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 1c9fA 90 5.45e+01 1c9fA d.15.2.1 37639 2i76A 276 5.51e+01 3bdqA 110 5.77e+01 2qztA 111 5.87e+01 1wwbX 103 5.90e+01 1wwcA b.1.1.4 21777 2yx8A 93 5.98e+01 1zyiA 171 6.01e+01 1jdqA 98 6.07e+01 d.68.3.3 66559 1g2rA 100 6.17e+01 1g2rA d.192.1.1 60231 3cm1A 139 6.25e+01 1e69B 322 6.54e+01 1e69B c.37.1.12 32377 1y8oB 128 6.55e+01 b.84.1.1 122759 2djfC 69 6.60e+01 2jn0A 61 6.66e+01 3cc6A 281 6.72e+01 1r8sE 203 6.84e+01 a.118.3.1 97248 1yarA 233 6.96e+01 d.153.1.4 122837 2rcfA 91 6.96e+01 2ol5A 202 7.05e+01 1jxmA 301 7.33e+01 b.34.2.1,c.37.1.1 67420,67421 2hm2Q 89 7.35e+01 1lm6A 215 7.46e+01 d.167.1.1 84628 2phlA 397 7.48e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1pvmA 184 7.50e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2i1b 153 7.57e+01 2i1b 2pnwA 380 7.62e+01 1b33B 161 7.73e+01 1qgwC a.1.1.3 15650 1u11A 182 7.80e+01 c.23.8.1 107576 2as0A 396 7.92e+01 b.122.1.9,c.66.1.51 127227,127228