# List of top-scoring protein chains for T0467.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b4oA 62 1.91e-01 b.34.13.1 37464 1bf4A 63 4.23e-01 1azpA b.34.13.1 37461 1bnzA 64 4.23e-01 1azpA b.34.13.1 37468 1jicA 62 4.25e-01 b.34.13.1 37462 1bbxC 63 4.25e-01 1azpA b.34.13.1 37465 1c8cA 64 5.29e-01 1azpA b.34.13.1 59084 1gsoA 431 5.36e-01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2cvrA 62 1.00e+00 b.34.13.1 130889 1zmdA 474 2.57e+00 1zy8A 474 2.62e+00 2fnjC 96 3.56e+00 d.42.1.1 133820 2c9wC 97 3.57e+00 d.42.1.1 130146 1nb8A 353 4.33e+00 d.3.1.9 80385 1wtqA 66 4.42e+00 1vcbB 112 4.49e+00 1vcbB d.42.1.1 38633 1wtoA 66 4.70e+00 2heoA 67 5.18e+00 2o6iA 480 6.03e+00 a.211.1.1 138920 2f1zA 522 6.37e+00 1b69A 69 6.53e+00 2bb8 d.10.1.1 37479 2o0pA 122 7.24e+00 d.166.1.7 138866 2jqnA 122 7.73e+00 1l1pA 106 9.59e+00 d.26.1.1 84518 1wtxA 66 1.09e+01 1azpA 66 1.13e+01 1azpA b.34.13.1 37467 1bb8A 71 1.15e+01 d.10.1.1 37478 7msiA 66 1.16e+01 b.85.1.1 28290 1j75A 67 1.17e+01 a.4.5.19 62673 1wvlA 80 1.26e+01 b.34.13.1 121343 1x10A 208 1.48e+01 1z8wA 208 1.49e+01 1z8xA 208 1.49e+01 1x12A 208 1.49e+01 1z8tA 208 1.50e+01 1ioiA 208 1.50e+01 1a2zA c.56.4.1 62629 2eo8A 208 1.56e+01 1iofA 208 1.59e+01 1a2zA c.56.4.1 62625 2df5A 213 1.60e+01 3brkX 420 1.67e+01 1iq7A 345 1.83e+01 c.94.1.2 66261 1xx8A 66 1.96e+01 1gywA 128 1.96e+01 b.1.10.2 70791 2o0qA 115 2.00e+01 d.166.1.7 138867 3bf5A 306 2.16e+01 1rh9A 373 2.18e+01 c.1.8.3 118773 2c0kA 151 2.22e+01 1wtvA 66 2.29e+01 1xyiA 66 2.41e+01 1zswA 338 2.59e+01 d.32.1.10,d.32.1.10 125620,125621 1f2eA 201 2.92e+01 1a0fA a.45.1.1,c.47.1.5 17745,33039 1dmxA 248 2.95e+01 2cba b.74.1.1 27959 1m4wA 197 3.14e+01 b.29.1.11 84801 1fajA 175 3.27e+01 b.40.5.1 25429 1mjzA 175 3.33e+01 b.40.5.1 25433 1wi2A 104 3.38e+01 b.36.1.1 114659 1wrjA 156 3.40e+01 1k77A 260 3.43e+01 c.1.15.5 72096 1mq1A 91 3.49e+01 a.39.1.2 79392 2h61A 92 3.51e+01 a.39.1.2 136169 1w26A 432 3.61e+01 a.223.1.1,d.241.2.1,d.26.1.1 109085,109086,109087 1xr7A 460 3.62e+01 e.8.1.4 115866 1tp7A 460 3.63e+01 3bjkA 153 3.67e+01 1r3fA 314 3.68e+01 b.122.1.1,d.265.1.2 96909,96910 1yliA 153 3.68e+01 d.38.1.1 123651 1zl3A 327 3.74e+01 b.122.1.1,d.265.1.2 125235,125236 1mjwA 175 3.74e+01 2prd b.40.5.1 25419 1k8wA 327 3.75e+01 b.122.1.1,d.265.1.2 83094,90388 1gyuA 140 3.81e+01 b.1.10.2 70789 1jovA 270 3.93e+01 b.30.5.7 84192 1bgjA 394 4.05e+01 c.3.1.2,d.16.1.2 30352,37883 1mhoA 88 4.13e+01 a.39.1.2 17171 1psbA 91 4.19e+01 a.39.1.2 95079 1cfpA 92 4.22e+01 1b4cA a.39.1.2 17172 1b4cA 92 4.25e+01 1b4cA a.39.1.2 17169 1ovtA 686 4.29e+01 c.94.1.2,c.94.1.2 35882,35883 1vdmA 153 4.35e+01 c.61.1.1 119994 2d3iA 686 4.35e+01 c.94.1.2,c.94.1.2 131208,131209 2ntzA 192 4.40e+01 1t6nA 220 4.54e+01 c.37.1.19 106576 1suuA 312 4.59e+01 b.68.10.1 99006 1on2A 142 4.64e+01 a.4.5.24,a.76.1.1 87103,87104 2cxjA 98 4.75e+01 1bouA 139 4.77e+01 1bouA a.88.1.1 18521 2dzxA 248 4.84e+01 2ev0A 142 4.97e+01 a.4.5.24,a.76.1.1 132413,132414 2gx8A 397 4.98e+01 c.135.1.1 135825 1mjxA 175 5.12e+01 2prd b.40.5.1 25430 2msiA 66 5.16e+01 b.85.1.1 28297 7ameA 66 5.17e+01 1msi b.85.1.1 28287 2a7bA 120 5.18e+01 b.1.10.2 126333 2qcuA 501 5.26e+01 2higA 487 5.38e+01 1dt9A 437 5.44e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1zlyA 203 5.84e+01 c.65.1.1 125271 2amxA 376 5.90e+01 c.1.9.1 127024 1cj3A 392 5.95e+01 1pbe c.3.1.2,d.16.1.2 30347,37878 1bgnA 394 5.95e+01 c.3.1.2,d.16.1.2 30339,37870 1cj4A 392 5.96e+01 1pbe c.3.1.2,d.16.1.2 30345,37876 1pbfA 394 5.96e+01 c.3.1.2,d.16.1.2 30349,37880 1pbdA 394 6.00e+01 c.3.1.2,d.16.1.2 30342,37873 1bkwA 394 6.00e+01 1pbe c.3.1.2,d.16.1.2 30343,37874 1cj2A 391 6.02e+01 1pbe c.3.1.2,d.16.1.2 30351,37882 1bf3A 394 6.03e+01 c.3.1.2,d.16.1.2 30346,37877 2furA 209 6.10e+01 b.45.1.1 134185 2avwA 311 6.16e+01 1meoA 209 6.18e+01 c.65.1.1 79035 1sglA 209 6.23e+01 d.124.1.1 105536 2ot9A 180 6.29e+01 1ftrA 296 6.30e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1y08A 323 6.31e+01 d.3.1.12 116280 3c2qA 345 6.35e+01 5msiA 66 6.35e+01 b.85.1.1 28293 2dzuA 248 6.36e+01 2nxqA 134 6.37e+01 2dztA 248 6.38e+01 2dzpA 248 6.43e+01 2dzwA 248 6.46e+01 1geqA 248 6.47e+01 2tysA c.1.2.4 28589 1mejA 223 6.49e+01 c.65.1.1 79029 2au1A 292 6.56e+01 1xr6A 460 6.64e+01 e.8.1.4 115865 1qalA 721 6.73e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24406,38039,38040,40019 2e09A 248 6.81e+01 2dpmA 284 7.19e+01 2dpmA c.66.1.28 34246 2dzsA 248 7.22e+01 1wdiA 345 7.62e+01 e.53.1.1 114535 1zx4A 192 7.63e+01 1iu1A 146 7.71e+01 b.1.10.2 71428 2oo6A 409 7.81e+01 1qjtA 99 7.83e+01 1eh2 a.39.1.6 17335 1q72L 218 7.86e+01 b.1.1.1,b.1.1.2 96016,96017 2dzvA 248 7.88e+01