# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c8cA 64 7.18e-03 1azpA b.34.13.1 59084 1azpA 66 8.27e-02 1azpA b.34.13.1 37467 1xyiA 66 1.65e-01 2fnjC 96 6.18e-01 d.42.1.1 133820 3bjkA 153 6.80e-01 1lm8C 96 9.53e-01 d.42.1.1 74034 1yliA 153 1.04e+00 d.38.1.1 123651 2h61A 92 1.11e+00 a.39.1.2 136169 2z1cA 75 1.84e+00 2gf6A 135 2.05e+00 d.38.1.1 135077 1nb8A 353 3.11e+00 d.3.1.9 80385 1vpmA 169 3.19e+00 d.38.1.1 113967 1bqk 124 3.88e+00 1bqk 2q8oA 136 4.69e+00 1bqkA 124 4.96e+00 b.6.1.1 22889 2fxqA 264 6.07e+00 1wrjA 156 6.73e+00 1zmdA 474 7.23e+00 2h27A 73 7.80e+00 a.4.13.2 135993 1vdmA 153 8.93e+00 c.61.1.1 119994 2ijrA 300 8.94e+00 1zt2B 212 9.12e+00 a.262.1.1 125625 1xvxA 312 9.30e+00 c.94.1.1 116097 1v93A 296 9.83e+00 c.1.23.1 100532 2rb6A 61 1.05e+01 2q1fA 1022 1.09e+01 1dt9A 437 1.10e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1zxzA 197 1.10e+01 3bmzA 199 1.20e+01 2ux7A 122 1.32e+01 1rreA 200 1.37e+01 d.14.1.10 97791 1qfhA 212 1.37e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 3bduA 62 1.42e+01 2egdA 98 1.63e+01 2ol1A 147 1.65e+01 2h2kA 106 1.67e+01 1jovA 270 1.71e+01 b.30.5.7 84192 1or7A 194 1.72e+01 a.4.13.2,a.177.1.1 87332,87333 1qftA 175 1.87e+01 1qftA b.60.1.1 27151 1q7hA 153 1.92e+01 b.122.1.1,d.17.6.2 96042,96043 2eqaA 352 1.94e+01 1oi0A 124 1.95e+01 c.97.3.1 93045 1nnwA 252 2.00e+01 d.159.1.5 80674 1sg7A 96 2.03e+01 a.239.1.1 118961 2daqA 110 2.06e+01 b.34.9.2 131354 1lfpA 249 2.09e+01 e.39.1.1 73885 2dztA 248 2.16e+01 1ehiA 377 2.32e+01 1iow c.30.1.2,d.142.1.1 31716,41484 2cb5A 453 2.35e+01 3gcb d.3.1.1 37035 1dkzA 219 2.40e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1pm4A 119 2.41e+01 b.135.1.1 94891 1jmmA 377 2.46e+01 b.30.6.1 71749 2dt8A 280 2.49e+01 1wmhA 89 2.57e+01 d.15.2.2 114744 2ig6A 150 2.60e+01 2dreA 180 2.61e+01 2icnB 118 2.77e+01 3ck1A 150 2.83e+01 1yy7A 213 2.88e+01 2ra2A 64 2.89e+01 2e2zA 100 2.95e+01 1mbyA 88 2.98e+01 d.223.1.1 78931 1zg2A 107 3.05e+01 2qcuA 501 3.10e+01 1wzaA 488 3.14e+01 b.71.1.1,c.1.8.1 121489,121490 1bb8 71 3.15e+01 2bb8 1bb8A 71 3.15e+01 d.10.1.1 37478 1nz0A 118 3.17e+01 d.14.1.2 86433 1yurA 98 3.19e+01 a.39.1.2 124062 2qkvA 96 3.23e+01 2hm2Q 89 3.32e+01 1ibyA 112 3.36e+01 1ibzA b.6.1.4 62233 2hdeA 148 3.43e+01 1whzA 70 3.44e+01 d.50.3.2 114656 1ur4A 399 3.46e+01 c.1.8.3 113402 1v33A 366 3.47e+01 d.264.1.1 100278 1nqzA 194 3.51e+01 d.113.1.1 86077 3crnA 132 3.51e+01 1i40A 175 3.51e+01 b.40.5.1 66024 1ll8A 114 3.54e+01 d.110.3.5 78089 2yvyA 278 3.55e+01 1w85A 368 3.60e+01 c.36.1.11 114335 1molA 94 3.71e+01 1molA d.17.1.1 37988 2ealA 148 3.75e+01 2yy8A 201 3.81e+01 2il5A 171 3.81e+01 2pfuA 99 3.83e+01 1cfbA 205 3.86e+01 b.1.2.1,b.1.2.1 21991,21992 2jn0A 61 3.87e+01 1o6sB 105 3.89e+01 b.1.6.1 81096 1qg3A 195 3.92e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1ex0A 731 3.93e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2ftbA 125 3.94e+01 b.60.1.2 134057 1ii7A 333 3.94e+01 1ii7A d.159.1.4 62415 1cfb 205 3.98e+01 1cfb 2cwrA 103 3.98e+01 1id0A 152 4.11e+01 d.122.1.3 66111 1q3iA 214 4.16e+01 d.220.1.1 104524 1hnfA 182 4.23e+01 b.1.1.1,b.1.1.3 19741,21680 2auwA 170 4.23e+01 a.35.1.10,d.331.1.1 127339,127340 1hnf 182 4.25e+01 1qa9A 1r17A 343 4.27e+01 b.2.3.4,b.2.3.4 96796,96797 1gd0A 122 4.27e+01 1dptA d.80.1.3 39834 2qzgA 94 4.28e+01 2bzeA 153 4.30e+01 1p6pA 125 4.36e+01 b.60.1.2 87839 1ckaA 57 4.47e+01 1ckaA b.34.2.1 24459 1yc7A 124 4.50e+01 1geqA 248 4.56e+01 2tysA c.1.2.4 28589 2oxgA 108 4.63e+01 2abbA 364 4.66e+01 c.1.4.1 126517 1k8wA 327 4.87e+01 b.122.1.1,d.265.1.2 83094,90388 2htaA 309 4.90e+01 2omzB 105 4.97e+01 2p9rA 102 4.97e+01 2d6mA 159 4.98e+01 2ha8A 184 5.01e+01 2eisA 133 5.04e+01 1wwbX 103 5.10e+01 1wwcA b.1.1.4 21777 3vub 101 5.11e+01 3vub 1vyrA 364 5.15e+01 c.1.4.1 108906 1cmcA 104 5.16e+01 1cmbA a.43.1.5 17462 1zx4A 192 5.24e+01 1fxkB 109 5.24e+01 1fxkA a.2.5.1 15704 1o7kA 131 5.27e+01 d.189.1.1 81144 2yv9A 291 5.49e+01 2zgwA 235 5.49e+01 1xp2A 179 5.49e+01 2cu9A 161 5.53e+01 1gsoA 431 5.55e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2agmA 167 5.57e+01 1vypX 364 5.58e+01 c.1.4.1 108905 2i1b 153 5.61e+01 2i1b 1s8eA 333 5.62e+01 d.159.1.4 105368 1mxiA 160 5.62e+01 c.116.1.1 79646 1l2hA 153 5.70e+01 b.42.1.2 77655 3bkhA 268 5.75e+01 1cmbA 104 5.76e+01 1cmbA a.43.1.5 17460 1q25A 432 5.83e+01 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1qysA 106 5.85e+01 k.41.1.1 96603 1qwyA 291 5.86e+01 b.84.3.2 96509 2vo9A 179 5.87e+01 1nciA 110 5.92e+01 1edhA b.1.6.1 22191 2yvlA 248 5.95e+01 1aonO 97 5.98e+01 b.35.1.1 24642 1mo7A 213 5.98e+01 d.220.1.1 85028 1e2wA 251 6.04e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 3c6kA 381 6.07e+01 2oyoA 196 6.07e+01 3buuA 229 6.14e+01 2imfA 203 6.14e+01 3bjoA 103 6.20e+01 2fd5A 180 6.24e+01 a.4.1.9,a.121.1.1 133291,133292 2gdgA 114 6.24e+01 d.80.1.3 135015 2dt9A 167 6.41e+01 3vubA 101 6.47e+01 b.34.6.1 24613 1z54A 132 6.47e+01 d.38.1.1 124450 1o5hA 214 6.50e+01 a.191.1.1 92497 2rhmA 193 6.52e+01 1lm6A 215 6.53e+01 d.167.1.1 84628 1f7dA 136 6.60e+01 1dun b.85.4.1 28353 1bkfA 107 6.60e+01 d.26.1.1 38382 1u2hA 99 6.63e+01 2gu9A 113 6.68e+01 1bkf 107 6.73e+01 1fkj 2qpwA 149 6.75e+01 1yq5A 144 6.81e+01 1v7oA 165 6.82e+01 d.67.1.2 100480 3bghA 236 6.84e+01 1wqwA 235 6.87e+01 b.34.1.1,d.104.1.2 121179,121180 1u06A 62 6.90e+01 b.34.2.1 119404 1jxgA 100 7.06e+01 b.6.1.1 67413 2ilrA 264 7.20e+01 1v54B 227 7.20e+01 b.6.1.2,f.17.2.1 100322,100323 2q9vA 90 7.23e+01 1rocA 155 7.23e+01 b.1.22.1 97673 2frqA 225 7.28e+01 d.3.1.1 133999 2z4tA 514 7.30e+01 2opeA 128 7.43e+01 2v8qA 157 7.47e+01 2sfaA 191 7.50e+01 b.47.1.1 25815 1nqcA 217 7.52e+01 d.3.1.1 86024 1jg1A 235 7.69e+01 c.66.1.7 66661 2ppnA 107 7.72e+01 2j01P 150 7.75e+01 1jdqA 98 7.80e+01 d.68.3.3 66559 1orc 71 7.80e+01 1orc 1orcA 71 7.80e+01 a.35.1.2 17054 2aaoA 166 7.93e+01 2qfmA 364 7.96e+01 1khbA 625 7.99e+01 c.91.1.1,c.109.1.1 68606,68607 1bypA 99 8.00e+01 1plc b.6.1.1 22858