# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2dbjA 125 1.316e+00 2geeA 189 1.935e+00 1fna 92 2.333e+00 1fnf 1cfbA 206 2.700e+00 b.1.2.1 21991 b.1.2.1 21992 1wcqA 602 2.807e+00 b.1.18.2 120894 b.18.1.1 120895 b.68.1.1 120896 1wisA 125 4.018e+00 b.1.2.1 120975 1qr4A 176 5.288e+00 1qr4B b.1.2.1 21986 b.1.2.1 21987 2rb8A 94 5.724e+00 1bpv 105 5.857e+00 1bpv 1fnaA 92 6.718e+00 b.1.2.1 21971 2h41A 96 6.819e+00 1ten 90 7.392e+00 1ten 1cfb 206 7.975e+00 1cfb 1fnf 369 8.921e+00 1fnf 1guiA 156 9.003e+00 b.18.1.14 76351 2fnbA 96 9.996e+00 2fnbA b.1.2.1 21979 2b5iC 192 1.076e+01 b.1.2.1 127898 b.1.2.1 127899 1ocsA 133 1.088e+01 d.189.1.1 92776 3d48R 196 1.311e+01 1qr4B 176 1.313e+01 1qr4B b.1.2.1 21988 b.1.2.1 21989 1tenA 90 1.427e+01 b.1.2.1 21990 1wxcB 73 1.589e+01 1qg3A 196 1.724e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1iojA 58 1.757e+01 j.39.1.1 46293 2pfuA 100 1.773e+01 1bp3B 198 2.160e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 2ic2A 105 2.287e+01 b.1.2.1 137233 1guaA 168 2.314e+01 1ctqA c.37.1.8 32013 1upsA 403 2.326e+01 b.29.1.2 113394 b.42.2.3 113395 1gu9A 173 2.530e+01 a.152.1.1 65540 2c2hA 169 2.556e+01 c.37.1.8 129668 1q38A 90 2.610e+01 b.1.2.1 95663 1a22B 193 2.652e+01 1axiB b.1.2.1 22003 b.1.2.1 22004 1mdcA 132 2.874e+01 b.60.1.2 27198 2occL 48 3.034e+01 2occL f.23.6.1 43526 3bnwA 161 3.181e+01 1hfoA 114 3.305e+01 d.80.1.3 61006 1fnhA 270 3.445e+01 1fnhA b.1.2.1 21976 b.1.2.1 21977 b.1.2.1 21978 1f2rI 101 3.542e+01 1c9fA d.15.2.1 37641 2zivA 282 3.642e+01 2rexB 172 3.674e+01 1jgsA 139 3.844e+01 a.4.5.28 66683 1xtqA 170 3.908e+01 c.37.1.8 122297 2c0dA 169 3.972e+01